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AT5G01270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : carboxyl-terminal domain (ctd) phosphatase-like 2
Curator
Summary (TAIR10)
Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses.
Computational
Description (TAIR10)
carboxyl-terminal domain (ctd) phosphatase-like 2 (CPL2); FUNCTIONS IN: double-stranded RNA binding, phosphatase activity; INVOLVED IN: response to auxin stimulus, response to osmotic stress, developmental growth; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: C-terminal domain phosphatase-like 1 (TAIR:AT4G21670.1); Has 234 Blast hits to 223 proteins in 82 species: Archae - 0; Bacteria - 8; Metazoa - 40; Fungi - 61; Plants - 110; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G01270-MONOMERBioCyc:ARA:GQT-1723-MONOMEREC:3.1.3.16eggNOG:COG5190
eggNOG:KOG0323EMBL:AL137189EMBL:AY557187EMBL:CP002688
EnsemblPlants:AT5G01270EnsemblPlants:AT5G01270.1entrez:831743ExpressionAtlas:Q5YDB5
Gene3D:3.30.160.20Gene3D:3.40.50.1000GeneID:831743Genevisible:Q5YDB5
GO:GO:0003723GO:GO:0004647GO:GO:0004721GO:GO:0005634
GO:GO:0005737GO:GO:0006351GO:GO:0007275GO:GO:0009734
GO:GO:0016311GO:GO:0045893GO:GO:0046872hmmpanther:PTHR23081
hmmpanther:PTHR23081:SF1HOGENOM:HOG000078695InParanoid:Q5YDB5InterPro:IPR004274
InterPro:IPR014720InterPro:IPR023214PaxDb:Q5YDB5Pfam:PF00035
Pfam:PF03031Pfam:Q5YDB5Pfscan:PS50137Pfscan:PS50969
PIR:T45967PRIDE:Q5YDB5PRO:PR:Q5YDB5PROSITE:PS50137
PROSITE:PS50969ProteinModelPortal:Q5YDB5Proteomes:UP000006548RefSeq:NP_195747.2
SMART:SM00358SMART:SM00577STRING:3702.AT5G01270.2SUPFAM:SSF54768
SUPFAM:SSF56784TAIR:AT5G01270tair10-symbols:ATCPL2tair10-symbols:CPL2
UniGene:At.21936UniProt:Q5YDB5
Coordinates (TAIR10) chr5:-:108163..112143
Molecular Weight (calculated) 85957.50 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.43
Length 770 amino acids
Sequence (TAIR10)
(BLAST)
001: MNRLGHKSVV YHGDLRLGEL DVNHVSSSHE FRFPNDEIRI HHLSPAGERC PPLAILQTIA SFAVRCKLES SAPVKSQELM HLHAVCFHEL KTAVVMLGDE
101: EIHLVAMPSK EKKFPCFWCF SVPSGLYDSC LRMLNTRCLS IVFDLDETLI VANTMKSFED RIEALKSWIS REMDPVRING MSAELKRYMD DRMLLKQYID
201: NDYAFDNGVL LKAQPEEVRP TSDGQEKVCR PVIRLPEKNT VLTRIKPEIR DTSVLVKLRP AWEELRSYLT AKTRKRFEVY VCTMAERDYA LEMWRLLDPE
301: AHLISLKELR DRIVCVKPDA KKSLLSVFNG GICHPKMAMV IDDRMKVWED KDQPRVHVVS AYLPYYAPQA ETALVVPHLC VARNVACNVR GYFFKEFDES
401: LMSSISLVYY EDDVENLPPS PDVSNYVVIE DPGFASNGNI NAPPINEGMC GGEVERRLNQ AAAADHSTLP ATSNAEQKPE TPKPQIAVIP NNASTATAAA
501: LLPSHKPSLL GAPRRDGFTF SDGGRPLMMR PGVDIRNQNF NQPPILAKIP MQPPSSSMHS PGGWLVDDEN RPSFPGRPSG LYPSQFPHGT PGSAPVGPFA
601: HPSHLRSEEV AMDDDLKRQN PSRQTTEGGI SQNHLVSNGR EHHTDGGKSN GGQSHLFVSA LQEIGRRCGS KVEFRTVIST NKELQFSVEV LFTGEKIGIG
701: MAKTKKDAHQ QAAENALRSL AEKYVAHVAP LARETEKGPE NDNGFLWESS EDVSNKGLEE EAPKENISEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)