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AT1G51350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 1374 Blast hits to 1058 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 493; Fungi - 490; Plants - 280; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5369eggNOG:KOG1293EMBL:AY093140EMBL:BT008416
EMBL:CP002684EnsemblPlants:AT1G51350EnsemblPlants:AT1G51350.1entrez:841558
Gene3D:1.25.10.10GeneID:841558Gramene:AT1G51350.1hmmpanther:PTHR15651
hmmpanther:PTHR15651:SF7HOGENOM:HOG000005742InterPro:IPR000225InterPro:IPR011989
InterPro:IPR016024KEGG:ath:AT1G51350OMA:GHSNVKLPfam:PF00514
PhylomeDB:Q8RWE7Proteomes:UP000006548RefSeq:NP_175546.1SMART:SM00185
SMR:Q8RWE7STRING:3702.AT1G51350.1SUPFAM:SSF48371TAIR:AT1G51350
UniGene:At.37837UniProt:Q8RWE7
Coordinates (TAIR10) chr1:+:19035851..19038738
Molecular Weight (calculated) 72397.10 Da
IEP (calculated) 5.23
GRAVY (calculated) 0.03
Length 666 amino acids
Sequence (TAIR10)
(BLAST)
001: MPTTTTSSAS SSSSASGNNR QSDVFSRLAS SDPEVKLKAL REVKNQIIGN RTKKLSFLKL GAIPAIASVL ADADDSDECN NILVQSAAAL GSFACGFEAG
101: VQAVLDAGVF PHLLRLLTNT DEKVVDAGAR SLRMIFQSNQ APKYDFLQEK NMEFLFSLLN SENENVSGLG ASIIAHACGT SVEQRVLCEA GVLEKLVILL
201: DGSLSQREAC LESLATVLKN NPEAVSDFVG LESGKYFNSV TELTKDRYPR TRLLSCLCLV VIYNTSPSYF INMGTKSSLI TTLLELLNDP GQSGDDAALG
301: LSCLIAEKED LQQLAYEADA IKNIVEILKT GSELQSKRLQ GLFLSLAELC SKLEDCRCSF LSLQVLDLLT DALRHKDADV RAAACICFRN AARSVKSLSA
401: GRFNSDHVML PLVQLLHDPS SSVQVAVLGA LNNIVMDFSS PKSSFIEYGG IKQLTELSKS MDPNTRCSAL RALRNLMFLA DIKRKELFYS DVKAQGLACL
501: ISDPEPPVQE QALALLRNLV DGCISSIEFV FDEDGLILDT VGRQLRKAPQ AQMAIQGMYV LTNVASGTEL HKEAVMEQLF PQAKAGSENF MLKFLQSDES
601: QLRSAAVWTI INLISPSSPG AFDRHVKLRN AGIIPQLKNM VNDACLDVKI RIRTVLGQSM SFGDNY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)