AT5G60170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1); Has 1342 Blast hits to 828 proteins in 247 species: Archae - 0; Bacteria - 318; Metazoa - 242; Fungi - 228; Plants - 152; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24228178..24232394 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108015.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.26 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||||||
| Length | 985 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDHGEKTCP LCAEEMDLTD QQLKPCKCGY QICVWCWHHI VDMAEKDQIE GRCPACRTPY DKEKIVGMTV NCDSLASEGN MERKKIQKSK SKSSEGRKQQ 101: LTSVRVIQRN LVYIVGLPLN LADEDLLQHK EYFGQYGKVL KVSMSRTASG VIQQFPNNTC SVYITYGKEE EAVRCIQAVH GFILDGKPLK ACFGTTKYCH 201: AWLRNVACVN PDCLYLHEVG SQDDSFTKDE IISAYTRVQQ ITGATNILQH HSGNMLPPPL DAYCSDSSSA KPIIKVPSTN ATSVPRYSPP SGSGSSSRST 301: ALPAAASWGT HQSLATSVTS NGSSDIQRST SVNGTLPFSA VVANAAHGPV SSNDILKRPS RKEESQIVMD KVKPSVLKPL QHNVVVSGSE RITAPDRDPT 401: SNRLSSSVDS AYGGRDIDQP SAYSGRDIDK PSSTVSSFDA ANEAVEDVPT VSNLLDGVAC MRITMNCRDE RPDITMAIGS QSDQGSIRQP GSEVSKLPDL 501: EQCRIDSSIN TDKKAISLED RIPRTRPGWD WISDLQSQMQ GSSKLQVEDI STLDSQRPHP EEDIIHSRLL SNLSSSSLDT NHMASRSSLP CEVRGSDRLH 601: LPNGFGEKSM SSVEHSLFAN EGRNKVNNAE DAILSNILSL DFDPWDESLT SPHNLAELLG EVDQRSSTLK PSNFLKQHNN QSRFSFARYE ESSNQAYDSE 701: NYSIYGQLSR DKPIQESAMS RDIYRNNLGS VNGFASNFAG GLDNFAASPL FSSHKNPVSR PQVSAPPGFS APNRLPPPGF SSHERVGLSS DTTLGNRFLD 801: STSLRNAYQV PPPVGNSNGA SDIDFVDPAI LAVGRGMVNA DLDMRSGFSS QLNSFENETG LHMLRQQSLS SAQQVNGFHH DLRNLSPSLN DPYGFSSRLM 901: DQTQGSSLSP FSQLPRQQPS ANSILSNGHH WDKWNEGQSV NNIGMAELLR NERLGFNGSL YNNGYEEPKF RIPSPGDVYN RTYGI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)