AT4G03260.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Outer arm dynein light chain 1 protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Outer arm dynein light chain 1 protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT1G78230.1); Has 15176 Blast hits to 10896 proteins in 720 species: Archae - 14; Bacteria - 5530; Metazoa - 6175; Fungi - 776; Plants - 1251; Viruses - 25; Other Eukaryotes - 1405 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:1429092..1431431 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74697.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.21 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||||||||||
| Length | 677 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVRFSCFNAH IHRHRPKKSV EGFSERVIKE DGSKSKGLSS IIFGRNIASV SENSKPAAVE RVWKSEEIKP SGILEHGIGT HQVLHLKKSQ SHGNELYLDG 101: RDATENGTDD ASDRITSPNS LEQQSGIHEA GSSKRVDESP NLYQQGPRAS VSAYQGSNQA LCGSIFSVGD LHHTDKDSRQ LDDTSLYGEQ MDNSNSQTPH 201: DSPLMVRSNS LPNIADSSSE KSSPFKYSSH HSRSSDDLHA LDTRQTDKSV HETDEEVKQE EDQDRDYDMH NSGDNNKENL VEDGYDDSYD YSSLAKDWIV 301: PPTDELKLSK FLEGETTNQQ AEFSGKDSKF KRIEDWVNDL QHVNLSEEAD EITGYDDELP REPVVLNEQA TSSAKVDAIK LTPGMEAAKK YISSLSASAT 401: TAQLVSHGLV VIPFLSAFVG LRVLNLSGNA IVRITAGALP RGLHALNLSK NSISVIEGLR ELTRLRVLDL SYNRILRLGH GLASCSSLKE LYLAGNKISE 501: IEGLHRLLKL TVLDLRFNKF STTKCLGQLA ANYSSLQAIS LEGNPAQKNV GDEQLRKYLL GLLPNLVYYN RQGTKDARLG TSTHQLDRGL RSELKNSSRK 601: SSHGASSSHK PGSSTARKAP ALQKRSKERR SRLPPVGHKL SPAAYENYHV ATGDRLSSLR TELSMRRSRS EGTLGPI |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)