AT5G02830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 31969 Blast hits to 11487 proteins in 269 species: Archae - 3; Bacteria - 39; Metazoa - 341; Fungi - 298; Plants - 29991; Viruses - 0; Other Eukaryotes - 1297 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:644458..648421 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95222.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.64 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 852 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRDFVIVFGS SSAITNPHHH HRRCYATAPE SNRKTKSNSS FTKLLPSLPQ QHSPSPASVS ATHSLSSHFS NVVRWIPDGS LEYYADFASK LAEDGRIEDV 101: ALIAETLAAE SGANVARFAS MVDYDLLSKG ISSNLRQGKI ESVVYTLKRI EKVGIAPLDL VDDSSVKLMR KQFRAMANSV QVEKAIDLME ILAGLGFKIK 201: ELVDPFDVVK SCVEISNPQL AIRYACLLPH TELLLCRIIH GFGKKGDMVS VMTAYEACKQ ILDTPNMYIC RTMIDVCGLC GDYVKSRYIY EDLLKENIKP 301: NIYVINSLMN VNSHDLGYTL KVYKNMQILD VTADMTSYNI LLKTCCLAGR VDLAQDIYKE AKRMESSGLL KLDAFTYCTI IKVFADAKMW KWALKVKDDM 401: KSVGVTPNTH TWSSLISACA NAGLVEQANH LFEEMLASGC EPNSQCFNIL LHACVEACQY DRAFRLFQSW KGSSVNESLY ADDIVSKGRT SSPNILKNNG 501: PGSLVNRNSN SPYIQASKRF CFKPTTATYN ILLKACGTDY YRGKELMDEM KSLGLSPNQI TWSTLIDMCG GSGDVEGAVR ILRTMHSAGT RPDVVAYTTA 601: IKICAENKCL KLAFSLFEEM RRYQIKPNWV TYNTLLKARS KYGSLLEVRQ CLAIYQDMRN AGYKPNDHFL KELIEEWCEG VIQENGQSQD KISDQEGDNA 701: GRPVSLLIEK VATHMQERTA GNLAIDLQGL TKIEARLVVL AVLRMIKEDY MRGDVVIDDV LIIIGTDEAN TVSGKQEITV QEALVKLLRD ELSLVVLPAG 801: QRNIIQDAHC VDDADQENTK SFVSISSTRR PAILERLMVT KASLYQWLQR RK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)