AT3G04760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 62164 Blast hits to 15231 proteins in 315 species: Archae - 6; Bacteria - 70; Metazoa - 1026; Fungi - 1135; Plants - 57538; Viruses - 0; Other Eukaryotes - 2389 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1303884..1305692 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67699.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.92 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 602 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTPLSSELVG FTIPFYSKTQ KPYSNSSHGL LLSHNRSSLL TFSNSNPNND NGRSFSSSGA RNLQTTTTTD ATLPTERRQQ HSQSLGFRDT QMLKIFHRSC 101: RSGNYIESLH LLETMVRKGY NPDVILCTKL IKGFFTLRNI PKAVRVMEIL EKFGQPDVFA YNALINGFCK MNRIDDATRV LDRMRSKDFS PDTVTYNIMI 201: GSLCSRGKLD LALKVLNQLL SDNCQPTVIT YTILIEATML EGGVDEALKL MDEMLSRGLK PDMFTYNTII RGMCKEGMVD RAFEMVRNLE LKGCEPDVIS 301: YNILLRALLN QGKWEEGEKL MTKMFSEKCD PNVVTYSILI TTLCRDGKIE EAMNLLKLMK EKGLTPDAYS YDPLIAAFCR EGRLDVAIEF LETMISDGCL 401: PDIVNYNTVL ATLCKNGKAD QALEIFGKLG EVGCSPNSSS YNTMFSALWS SGDKIRALHM ILEMMSNGID PDEITYNSMI SCLCREGMVD EAFELLVDMR 501: SCEFHPSVVT YNIVLLGFCK AHRIEDAINV LESMVGNGCR PNETTYTVLI EGIGFAGYRA EAMELANDLV RIDAISEYSF KRLHRTFPLL NVLQRSSQTF 601: GY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)