AT3G14330.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G46790.1); Has 35559 Blast hits to 14091 proteins in 265 species: Archae - 0; Bacteria - 6; Metazoa - 58; Fungi - 108; Plants - 34937; Viruses - 0; Other Eukaryotes - 450 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:4779688..4782451 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79770.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.11 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 710 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMIGKLWRSV GTVGKFDGRY DGVRTMVGKA SNRAGVHVTD TVLFEETSFE FSPSLTPELN EFPMPSLDVI TPQAYLTPLG SQSINHAKFL QIPWRQFVFT 101: KPLGLSKSTK LDEAVTLIEN SSSSPSNLST PEAYTDLLHA CISAKSLHHG IKICSLILNN PSLRHNPKLL SKLITLFSVC RRLDLARKIF DDVTDSSLLT 201: EKVWAAMAIG YSRNGSPRDA LIVYVDMLCS FIEPGNFSIS VALKACVDLK DLRVGRGIHA QIVKRKEKVD QVVYNVLLKL YMESGLFDDA RKVFDGMSER 301: NVVTWNSLIS VLSKKVRVHE MFNLFRKMQE EMIGFSWATL TTILPACSRV AALLTGKEIH AQILKSKEKP DVPLLNSLMD MYGKCGEVEY SRRVFDVMLT 401: KDLASWNIML NCYAINGNIE EVINLFEWMI ESGVAPDGIT FVALLSGCSD TGLTEYGLSL FERMKTEFRV SPALEHYACL VDILGRAGKI KEAVKVIETM 501: PFKPSASIWG SLLNSCRLHG NVSVGEIAAK ELFVLEPHNP GNYVMVSNIY ADAKMWDNVD KIREMMKQRG VKKEAGCSWV QVKDKIQIFV AGGGYEFRNS 601: DEYKKVWTEL QEAIEKSGYS PNTSVVLHDV DEETKANWVC GHSERLATTY SLIHTGEGVP IRITKNLRVC ADCHSWMKIV SQVTRRVIVL RDTKRFHHFV 701: DGICSCKDYW |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)