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AT5G50280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1006 (EMB1006); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB024031EMBL:CP002688
EnsemblPlants:AT5G50280EnsemblPlants:AT5G50280.1entrez:835093Gene3D:1.25.40.10
GeneID:835093Genevisible:Q9FGR7GO:GO:0009507Gramene:AT5G50280.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF606HOGENOM:HOG000241327InParanoid:Q9FGR7
InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9FGR7KEGG:ath:AT5G50280
OMA:FAKQGHYPaxDb:Q9FGR7Pfam:PF01535Pfam:PF13041
Pfam:PF13812Pfam:Q9FGR7Pfscan:PS51375PhylomeDB:Q9FGR7
PRIDE:Q9FGR7PRO:PR:Q9FGR7PROSITE:PS51375ProteinModelPortal:Q9FGR7
Proteomes:UP000006548RefSeq:NP_199839.1SMR:Q9FGR7STRING:3702.AT5G50280.1
TAIR:AT5G50280tair10-symbols:EMB1006TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.29741UniProt:Q9FGR7
Coordinates (TAIR10) chr5:+:20459238..20461504
Molecular Weight (calculated) 82177.30 Da
IEP (calculated) 7.25
GRAVY (calculated) -0.44
Length 723 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMASSSLAT QSFFSSFPLS HRLHFPVPYL LLRSSFFRKP LSLSATSPSS SSSSPSIFLS CFDDALPDKI QQPENSTINS EESECEEEDD EEGDDFTDPI
101: LKFFKSRTLT SESTADPARE SKFSLQKNRR TSWHLAPDFA DPETEIESKP EESVFVTNQQ TLGVHIPFES GVAREILELA KNLKENQTLG EMLSGFERRV
201: SDTECVEALV MMGESGFVKS CLYFYEWMSL QEPSLASPRA CSVLFTLLGR ERMADYILLL LSNLPDKEEF RDVRLYNAAI SGLSASQRYD DAWEVYEAMD
301: KINVYPDNVT CAILITTLRK AGRSAKEVWE IFEKMSEKGV KWSQDVFGGL VKSFCDEGLK EEALVIQTEM EKKGIRSNTI VYNTLMDAYN KSNHIEEVEG
401: LFTEMRDKGL KPSAATYNIL MDAYARRMQP DIVETLLREM EDLGLEPNVK SYTCLISAYG RTKKMSDMAA DAFLRMKKVG LKPSSHSYTA LIHAYSVSGW
501: HEKAYASFEE MCKEGIKPSV ETYTSVLDAF RRSGDTGKLM EIWKLMLREK IKGTRITYNT LLDGFAKQGL YIEARDVVSE FSKMGLQPSV MTYNMLMNAY
601: ARGGQDAKLP QLLKEMAALN LKPDSITYST MIYAFVRVRD FKRAFFYHKM MVKSGQVPDP RSYEKLRAIL EDKAKTKNRK DKTAILGIIN SKFGRVKAKT
701: KGKKDEFWKY KTNRTTSPGR HRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)