suba logo
AT5G55740.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At5g55740-GFP (AA 1-100)mitochondrial marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Encodes a member of the E+ subgroup of the PPR protein family, containing the E and E+ motifs following a tandem array of PPR motifs. It also contains an unknown motif consisting of 15 aa, which is highly conserved in some PPR proteins, including CRR4. CRR21 is involved in RNA editing of the site 2 of ndhD (ndhD-2),which encodes a subunit of the NDH complex. The RNA editing changes aa 128 from Ser to Leu. Mutants have impaired NDH complex activity.
Computational
Description (TAIR10)
chlororespiratory reduction 21 (CRR21); INVOLVED IN: mRNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB009050EMBL:CP002688
EnsemblPlants:AT5G55740EnsemblPlants:AT5G55740.1entrez:835668Gene3D:1.25.40.10
GeneID:835668Genevisible:Q9FM64GO:GO:0009507GO:GO:0016556
Gramene:AT5G55740.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF539HOGENOM:HOG000238049
InParanoid:Q9FM64InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9FM64
KEGG:ath:AT5G55740OMA:NEYIETKPaxDb:Q9FM64Pfam:PF01535
Pfam:PF12854Pfam:PF13041Pfam:Q9FM64Pfscan:PS51375
PhylomeDB:Q9FM64PRIDE:Q9FM64PRO:PR:Q9FM64PROSITE:PS51375
ProteinModelPortal:Q9FM64Proteomes:UP000006548RefSeq:NP_200385.1SMR:Q9FM64
STRING:3702.AT5G55740.1SUPFAM:SSF48452TAIR:AT5G55740tair10-symbols:CRR21
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.65685UniProt:Q9FM64
Coordinates (TAIR10) chr5:-:22561941..22564433
Molecular Weight (calculated) 92142.00 Da
IEP (calculated) 6.22
GRAVY (calculated) 0.02
Length 830 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLPFNTIP NKVPFSVSSK PSSKHHDEQA HSPSSTSYFH RVSSLCKNGE IKEALSLVTE MDFRNLRIGP EIYGEILQGC VYERDLSTGK QIHARILKNG
101: DFYARNEYIE TKLVIFYAKC DALEIAEVLF SKLRVRNVFS WAAIIGVKCR IGLCEGALMG FVEMLENEIF PDNFVVPNVC KACGALKWSR FGRGVHGYVV
201: KSGLEDCVFV ASSLADMYGK CGVLDDASKV FDEIPDRNAV AWNALMVGYV QNGKNEEAIR LFSDMRKQGV EPTRVTVSTC LSASANMGGV EEGKQSHAIA
301: IVNGMELDNI LGTSLLNFYC KVGLIEYAEM VFDRMFEKDV VTWNLIISGY VQQGLVEDAI YMCQLMRLEK LKYDCVTLAT LMSAAARTEN LKLGKEVQCY
401: CIRHSFESDI VLASTVMDMY AKCGSIVDAK KVFDSTVEKD LILWNTLLAA YAESGLSGEA LRLFYGMQLE GVPPNVITWN LIILSLLRNG QVDEAKDMFL
501: QMQSSGIIPN LISWTTMMNG MVQNGCSEEA ILFLRKMQES GLRPNAFSIT VALSACAHLA SLHIGRTIHG YIIRNLQHSS LVSIETSLVD MYAKCGDINK
601: AEKVFGSKLY SELPLSNAMI SAYALYGNLK EAIALYRSLE GVGLKPDNIT ITNVLSACNH AGDINQAIEI FTDIVSKRSM KPCLEHYGLM VDLLASAGET
701: EKALRLIEEM PFKPDARMIQ SLVASCNKQR KTELVDYLSR KLLESEPENS GNYVTISNAY AVEGSWDEVV KMREMMKAKG LKKKPGCSWI QITGEEGVHV
801: FVANDKTHTR INEIQMMLAL LLYDMGTGSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)