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AT1G49380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytochrome c biogenesis protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cytochrome c biogenesis protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ResB-like (InterPro:IPR007816); Has 1416 Blast hits to 1414 proteins in 516 species: Archae - 0; Bacteria - 1016; Metazoa - 2; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1333eggNOG:ENOG410IG6UEMBL:AC007504EMBL:AK117293
EMBL:CP002684EnsemblPlants:AT1G49380EnsemblPlants:AT1G49380.1entrez:841361
GeneID:841361Genevisible:Q9XIA4GO:GO:0009535GO:GO:0016021
GO:GO:0017004Gramene:AT1G49380.1HAMAP:MF_01392hmmpanther:PTHR31566
hmmpanther:PTHR31566:SF0HOGENOM:HOG000265630InParanoid:Q9XIA4InterPro:IPR007816
InterPro:IPR023494iPTMnet:Q9XIA4KEGG:ath:AT1G49380KO:K07399
OMA:TIYQADWPaxDb:Q9XIA4Pfam:PF05140Pfam:Q9XIA4
PhylomeDB:Q9XIA4PIR:B96530PRIDE:Q9XIA4PRO:PR:Q9XIA4
Proteomes:UP000006548RefSeq:NP_564544.1STRING:3702.AT1G49380.1TAIR:AT1G49380
TMHMM:TMhelixUniGene:At.38238UniProt:Q9XIA4
Coordinates (TAIR10) chr1:+:18276794..18279204
Molecular Weight (calculated) 59396.20 Da
IEP (calculated) 8.76
GRAVY (calculated) 0.03
Length 547 amino acids
Sequence (TAIR10)
(BLAST)
001: MIVTLNPKIL HFSKIHPFSR PSSYLCRTRN VSLITNCKLQ KPQDGNQRSS SNRNLTKTIS LSDSAPPVTE ETGDGIVKGG GNGGGGGGDG RGGLGFLKIL
101: PRKVLSVLSN LPLAITEMFT IAALMALGTV IEQGETPDFY FQKYPEDNPV LGFFTWRWIS TLGLDHMYSA PIFLGMLVLL AASLMACTYT TQIPLVKVAR
201: RWSFMKSDEA IKKQEFADTL PRASIQDLGM ILMGDGFEVF MKGPSLYAFK GLAGRFAPIG VHIAMLLIMV GGTLSATGSF RGSVTVPQGL NFVMGDVLAP
301: IGFFSIPTDA FNTEVHVNRF TMDYYDSGEV SQFHSDLSLR DLNGKEVLRK TISVNDPLRY GGVTVYQTDW SFSALQVTKD GEGPFNLAMA PIKINGDKKL
401: YGTFLPVGDT NAPNVKGISM LARDLQSIVV YDLDGKFAGI RRPSSKLPIE INGMKIVIED AIGSTGLELK TDPGVPVVYA GFGALMLTTC ISYLSHSQIW
501: ALQNGTALVV GGKTNRAKNQ FPDDMNRLLD QVPELIKKNT SVVSEQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)