AT2G31170.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 0.981 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Cysteinyl-tRNA synthetase, class Ia family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
SYCO ARATH; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: cysteinyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, DALR (InterPro:IPR015273), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: Cysteinyl-tRNA synthetase, class Ia family protein (TAIR:AT5G38830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:13282559..13285616 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 63917.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 563 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASSVLNLFK SCRPFTPIRF SSLPKSQFRI QFPLRPGKET QLRRCFTTLS SLTDGGAPIS GGKELWLHNT MSRKKELFKP KVEGKVGMYV CGVTAYDLSH 101: IGHARVYVTF DVLLRYLKHL GYEVSYVRNF TDVDDKIIAR AKELEEDPIS LSRRFCEEFN RDMEQLQCLD PSVQPRVSDH IPQIIDLIKQ ILDNGYAYKV 201: DGDIYFSVDK FPTYGKLSGR KLEDNRAGER VAVDTRKKHP ADFALWKAAK EGEPFWESPW GRGRPGWHIE CSAMSAAYLG YSFDIHGGGM DLVFPHHENE 301: IAQSCAACDS SNISYWIHNG FVTVDSEKMS KSLGNFFTIR QVIDLYHPLA LRLFLMGTHY RSPINYSDFL LESASERIFY IYQTLHDCES ALGEKDSTFE 401: NGSVPSDTLT SINTFRTEFV ASMSDDLLTP VTLAAMSEPL KTINDLIHTR KGKKQARREE SLKALETTIR DVLTILGLMP TSYSEVLEQL KEKALKRAGL 501: KEEDVLQRVQ ERTDARKNKE YERSDAIRKD LAKVGIALMD SPEGTTWRPA IPLALQEPVT TTP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)