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AT5G53580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-linked oxidoreductase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G06690.1); Has 29267 Blast hits to 29250 proteins in 2546 species: Archae - 568; Bacteria - 19101; Metazoa - 2030; Fungi - 2126; Plants - 1340; Viruses - 0; Other Eukaryotes - 4102 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:MONOMER-17899EC:1.1.1.65eggNOG:COG0667eggNOG:KOG1575
EMBL:AB015476EMBL:AK221481EMBL:BT012653EMBL:CP002688
EnsemblPlants:AT5G53580EnsemblPlants:AT5G53580.1entrez:835440Gene3D:3.20.20.100
GeneID:835440Genevisible:Q56Y42GO:GO:0009443GO:GO:0009507
GO:GO:0042820GO:GO:0042821GO:GO:0050236GO:GO:0070402
Gramene:AT5G53580.1hmmpanther:PTHR11732hmmpanther:PTHR11732:SF248HOGENOM:HOG000250278
InParanoid:Q56Y42InterPro:IPR001395InterPro:IPR018170InterPro:IPR020471
InterPro:IPR023210KEGG:ath:AT5G53580KO:K05275OMA:MHWSTAN
PANTHER:PTHR11732PaxDb:Q56Y42Pfam:PF00248Pfam:Q56Y42
PhylomeDB:Q56Y42PRIDE:Q56Y42PRINTS:PR00069PRO:PR:Q56Y42
PROSITE:PS00062ProteinModelPortal:Q56Y42Proteomes:UP000006548RefSeq:NP_200170.2
scanprosite:PS00062SMR:Q56Y42STRING:3702.AT5G53580.1SUPFAM:SSF51430
TAIR:AT5G53580UniGene:At.29548UniPathway:UPA00192UniProt:Q56Y42
Coordinates (TAIR10) chr5:-:21765215..21766919
Molecular Weight (calculated) 40578.40 Da
IEP (calculated) 9.67
GRAVY (calculated) -0.14
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MALTLSTTKT FTNINCSNNT SNITTFKPLK LPLFWPWQKV KMGPLSVSPM GFGTWAWGNQ LLWGYQTSMD DQLQQAFELA LENGINLFDT ADSYGTGRLN
101: GQSERLLGKF IKESQGLKGK QNEVVVATKF AAYPWRLTSG QFVNACRASL DRLQIDQLGI GQLHWSTASY APLQELVLWD GLVQMYEKGL VRAVGVSNYG
201: PQQLVKIHDY LKTRGVPLCS AQVQFSLLSM GKEQLEIKSI CDELGIRLIS YSPLGLGMLT GKYSSSKLPT GPRSLLFRQI LPGLEPLLLA LSEIAKKRGK
301: TMPQVAINWC ICKGTVPIPG IKSVRHVEDN LGALGWKLTN DEQLQLEYAA KESPKSMIQN IFQTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)