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AT3G26710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cofactor assembly of complex C
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cofactor assembly of complex C (CCB1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3529 (InterPro:IPR021919); Has 212 Blast hits to 212 proteins in 63 species: Archae - 0; Bacteria - 77; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ30eggNOG:ENOG4111H41EMBL:AB026648EMBL:AK227251
EMBL:AY087129EMBL:AY140025EMBL:BT006294EMBL:CP002686
EMBL:X98130EnsemblPlants:AT3G26710EnsemblPlants:AT3G26710.1entrez:822283
GeneID:822283Genevisible:Q9LSE4GO:GO:0009507GO:GO:0009535
GO:GO:0010190GO:GO:0016021Gramene:AT3G26710.1hmmpanther:PTHR35302
hmmpanther:PTHR35302:SF1HOGENOM:HOG000243835InParanoid:Q9LSE4InterPro:IPR021919
KEGG:ath:AT3G26710OMA:VPDVGNNPaxDb:Q9LSE4Pfam:PF12046
PhylomeDB:Q9LSE4PRIDE:Q9LSE4PRO:PR:Q9LSE4Proteomes:UP000006548
RefSeq:NP_566797.1STRING:3702.AT3G26710.1TAIR:AT3G26710tair10-symbols:CCB1
TMHMM:TMhelixUniGene:At.5353UniProt:Q9LSE4
Coordinates (TAIR10) chr3:+:9813550..9814606
Molecular Weight (calculated) 30103.10 Da
IEP (calculated) 10.40
GRAVY (calculated) 0.03
Length 267 amino acids
Sequence (TAIR10)
(BLAST)
001: MATKLISPPL SCPWVTSREV IIKGLPRRRR EWMVTKRNRV SAVTAMIVEP LSVVSSSAIQ IHQWWEQNPN SLLLMTEATG GYSLASYYTS LGLFVISVPG
101: LWSLIKRSVK SKIVRKTFVV NDVKKEPKQV AGEILSFFTR KNFNITDRGE TITFEGKMVP SRGQAALLTF CTCISLASVG LVLTITVPDF GNNWFFIILL
201: SPLAGVYYWK KASRKEEIKV KMMVGSKGRL DEIVVQGDDV QVEEMRKELQ LNEKGMVYVK GLFERSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)