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AT4G28660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photosystem II reaction center PSB28 protein
Curator
Summary (TAIR10)
Similar to PsbW subunit of photosystem II.
Computational
Description (TAIR10)
photosystem II reaction center PSB28 protein (PSB28); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, photosystem II reaction center, chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein Psb28, class 1 (InterPro:IPR005610); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:AF462867EMBL:AL161573EMBL:AY086344EMBL:AY113018
EMBL:CP002687EnsemblPlants:AT4G28660EnsemblPlants:AT4G28660.1entrez:828984
ExpressionAtlas:Q8W0Y8GeneID:828984Genevisible:Q8W0Y8GO:GO:0009535
GO:GO:0009654GO:GO:0015979HAMAP:MF_01370hmmpanther:PTHR34963
hmmpanther:PTHR34963:SF2HOGENOM:HOG000238646InParanoid:Q8W0Y8InterPro:IPR005610
iPTMnet:Q8W0Y8Pfam:PF03912Pfam:Q8W0Y8PhylomeDB:Q8W0Y8
PIR:T10660PRIDE:Q8W0Y8PRO:PR:Q8W0Y8ProDom:PD012692
ProteinModelPortal:Q8W0Y8Proteomes:UP000006548RefSeq:NP_567814.1SMR:Q8W0Y8
TAIR:AT4G28660tair10-symbols:PSB28TIGRfam:TIGR03047TIGRFAMs:TIGR03047
UniGene:At.23067UniGene:At.28252UniProt:Q8W0Y8
Coordinates (TAIR10) chr4:+:14150008..14150933
Molecular Weight (calculated) 20193.40 Da
IEP (calculated) 9.99
GRAVY (calculated) -0.27
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MACVRSIGSL TSVNHSQRNV PRSGIVLSSC SVLPIKSSSF TGSPVSLPRA QPSSRTALRP MKPVSITMMV KPALQFIQGT DEMTIPDVKL TRSRDGSNGM
101: ALFSFDQPSV FDSSGEVGEI TGLYMIDEEG VIQSTDVNAR FVNGKPEGIV AKHIMRSPKE WDRFMRFMER YSDQNGLQFV KKQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)