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AT3G51820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UbiA prenyltransferase family protein
Curator
Summary (TAIR10)
Encodes a protein with chlorophyll synthase activity. This enzyme has been shown to perform the esterification of chlorophyllide (a and b), the last step of chlorophyll biosynthesis. Although it can use either geranylgeranyl pyrophosphate (GGPP) or phytyl pyrophosphate (PhyPP) as substrates, the esterification reaction was faster with GGPP than with PhyPP.
Computational
Description (TAIR10)
G4; FUNCTIONS IN: chlorophyll synthetase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bacteriochlorophyll/chlorophyll synthetase (InterPro:IPR006372), Chlorophyll synthase, ChlG (InterPro:IPR011799), UbiA prenyltransferase (InterPro:IPR000537); BEST Arabidopsis thaliana protein match is: homogentisate prenyltransferase (TAIR:AT3G11945.1); Has 2782 Blast hits to 2782 proteins in 800 species: Archae - 310; Bacteria - 1584; Metazoa - 63; Fungi - 24; Plants - 236; Viruses - 0; Other Eukaryotes - 565 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G51820-MONOMERBioCyc:MetaCyc:AT3G51820-MONOMERBioGrid:9663EC:2.5.1.62
eggNOG:COG0382eggNOG:ENOG410IFJUEMBL:AF049236EMBL:AY042821
EMBL:AY081481EMBL:CP002686EMBL:U19382EnsemblPlants:AT3G51820
EnsemblPlants:AT3G51820.1entrez:824345GeneID:824345Genevisible:Q38833
GO:GO:0009507GO:GO:0009534GO:GO:0015995GO:GO:0016021
GO:GO:0031969GO:GO:0046408Gramene:AT3G51820.1gramene_pathway:2.5.1.-
gramene_pathway:2.5.1.62gramene_pathway:PWY-5064gramene_pathway:PWY-5068gramene_pathway:PWY-5086
gramene_plant_reactome:1119320gramene_plant_reactome:1119412gramene_plant_reactome:6876413gramene_plant_reactome:6877094
hmmpanther:PTHR11048hmmpanther:PTHR11048:SF18HOGENOM:HOG000149392InParanoid:Q38833
InterPro:IPR000537InterPro:IPR006372InterPro:IPR011799KEGG:00860+2.5.1.62
KEGG:ath:AT3G51820KO:K04040OMA:QDMYFLRPaxDb:Q38833
Pfam:PF01040Pfam:Q38833PhylomeDB:Q38833PIR:S60222
PRIDE:Q38833PRO:PR:Q38833ProteinModelPortal:Q38833Proteomes:UP000006548
RefSeq:NP_190750.1SMR:Q38833STRING:3702.AT3G51820.1TAIR:AT3G51820
tair10-symbols:ATG4tair10-symbols:CHLGtair10-symbols:G4TIGRfam:TIGR01476
TIGRfam:TIGR02056TIGRFAMs:TIGR01476TIGRFAMs:TIGR02056TMHMM:TMhelix
UniGene:At.5423UniPathway:UPA00668UniProt:Q38833
Coordinates (TAIR10) chr3:-:19216301..19218934
Molecular Weight (calculated) 41883.70 Da
IEP (calculated) 8.54
GRAVY (calculated) 0.27
Length 387 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSILNTVST IHSSRVTSVD RVGVLSLRNS DSVEFTRRRS GFSTLIYESP GRRFVVRAAE TDTDKVKSQT PDKAPAGGSS INQLLGIKGA SQETNKWKIR
101: LQLTKPVTWP PLVWGVVCGA AASGNFHWTP EDVAKSILCM MMSGPCLTGY TQTINDWYDR DIDAINEPYR PIPSGAISEP EVITQVWVLL LGGLGIAGIL
201: DVWAGHTTPT VFYLALGGSL LSYIYSAPPL KLKQNGWVGN FALGASYISL PWWAGQALFG TLTPDVVVLT LLYSIAGLGI AIVNDFKSVE GDRALGLQSL
301: PVAFGTETAK WICVGAIDIT QLSVAGYLLA SGKPYYALAL VALIIPQIVF QFKYFLKDPV KYDVKYQASA QPFLVLGIFV TALASQH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)