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AT5G47110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Chlorophyll A-B binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chlorophyll A-B binding family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis, light harvesting; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Chlorophyll A-B binding family protein (TAIR:AT4G17600.1); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
DIP:DIP-59383NeggNOG:ENOG410IVH1eggNOG:ENOG4111GIBEMBL:BT010859
EMBL:BT012619EMBL:CP002688EnsemblPlants:AT5G47110EnsemblPlants:AT5G47110.1
entrez:834757GeneID:834757GO:GO:0009507GO:GO:0009535
GO:GO:0019899GO:GO:0042651GO:GO:0043495GO:GO:1902326
GO:GO:1904964GO:GO:1904966Gramene:AT5G47110.1hmmpanther:PTHR14154
hmmpanther:PTHR14154:SF14HOGENOM:HOG000264691InterPro:IPR022796InterPro:IPR023329
KEGG:ath:AT5G47110OMA:HSHELTPPfam:PF00504PhylomeDB:Q6NKS4
Proteomes:UP000006548RefSeq:NP_199522.2SMR:Q6NKS4STRING:3702.AT5G47110.1
SUPFAM:0043399SUPFAM:SSF103511TAIR:AT5G47110tair10-symbols:LIL3:2
UniGene:At.9740UniProt:Q6NKS4
Coordinates (TAIR10) chr5:-:19134218..19135238
Molecular Weight (calculated) 28602.80 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.25
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MSISMALFSP PISSSLQNPN LIPKISTSLL STKRFSLISV PRASSDNGTT SPVVEIPKPA SVAVEEVPVK SPAESSSASE NGAVGGEATD SSTETVIKYQ
101: NAKWVNGTWD LKQFEKDGKT DWDSVIVSEA KRRKWLEDNP ETTSNDELVV FDTSIIPWWA WMKRYHLPEA ELLNGRAAMI GFFMAYFVDS LTGVGLVDQM
201: GNFFCKTLLF VAVAGVLFIR KNEDLDKLKD LFDETTLYDK QWQAAWKEPD SSTVSSKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)