suba logo
AT2G43750.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30394608 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): Golgi
  • PMID:22550958 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:21472856 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:21311031 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:12938931 (2003): plastid
  • PMID:11743115 (2001): mitochondrion
FP Images

Arabidopsis cell culture (plastidal marker)

At2g43750-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz

onion epidermal cell layer (plastidal marker)

At2g43750-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : O-acetylserine (thiol) lyase B
Curator
Summary (TAIR10)
Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasB, the key enzyme for fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide.
Computational
Description (TAIR10)
O-acetylserine (thiol) lyase B (OASB); FUNCTIONS IN: cysteine synthase activity; INVOLVED IN: response to cadmium ion, cysteine biosynthetic process; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: O-acetylserine (thiol) lyase isoform C (TAIR:AT3G59760.3); Has 23408 Blast hits to 23391 proteins in 2708 species: Archae - 428; Bacteria - 16574; Metazoa - 458; Fungi - 677; Plants - 586; Viruses - 2; Other Eukaryotes - 4683 (source: NCBI BLink).
Protein Annotations
EC:2.5.1.47eggNOG:COG0031eggNOG:KOG1252EMBL:AK226461
EMBL:AY096681EnsemblPlants:AT2G43750EnsemblPlants:AT2G43750.1EnsemblPlants:AT2G43750.2
entrez:818978ExpressionAtlas:Q0WW95GeneID:818978GO:GO:0004124
GO:GO:0006535GO:GO:0016740GO:GO:0046686Gramene:AT2G43750.1
Gramene:AT2G43750.2hmmpanther:PTHR10314hmmpanther:PTHR10314:SF110InterPro:IPR001216
InterPro:IPR001926InterPro:IPR005856InterPro:IPR005859KEGG:00270+2.5.1.47
KEGG:00920+2.5.1.47KEGG:ath:AT2G43750KO:K01738OMA:LSTPMFS
PaxDb:Q0WW95Pfam:P47999Pfam:PF00291PhylomeDB:Q0WW95
PRIDE:Q0WW95PROSITE:PS00901ProteinModelPortal:Q0WW95RefSeq:NP_001189745.1
RefSeq:NP_181903.1scanprosite:PS00901SMR:Q0WW95STRING:3702.AT2G43750.1
SUPFAM:SSF53686TAIR:AT2G43750tair10-symbols:ACS1tair10-symbols:ATCS-B
tair10-symbols:CPACS1tair10-symbols:OASBTIGRfam:TIGR01136TIGRfam:TIGR01139
TIGRFAMs:TIGR01136TIGRFAMs:TIGR01139UniGene:At.20491UniGene:At.72689
unipathway:UPA00136UniProt:P47999UniProt:Q0WW95
Coordinates (TAIR10) chr2:-:18129604..18132322
Molecular Weight (calculated) 41658.60 Da
IEP (calculated) 8.18
GRAVY (calculated) 0.02
Length 392 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATSSSAFL LNPLTSRHRP FKYSPELSSL SLSSRKAAAF DVSSAAFTLK RQSRSDVVCK AVSIKPEAGV EGLNIADNAA QLIGKTPMVY LNNVVKGCVA
101: SVAAKLEIME PCCSVKDRIG YSMITDAEEK GLITPGKSVL VESTSGNTGI GLAFIAASKG YKLILTMPAS MSLERRVLLR AFGAELVLTE PAKGMTGAIQ
201: KAEEILKKTP NSYMLQQFDN PANPKIHYET TGPEIWEDTR GKIDILVAGI GTGGTITGVG RFIKERKPEL KVIGVEPTES AILSGGKPGP HKIQGIGAGF
301: VPKNLDLAIV DEYIAISSEE AIETSKQLAL QEGLLVGISS GAAAAAAIQV AKRPENAGKL IAVVFPSFGE RYLSTQLFQS IREECEQMQP EL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)