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AT2G20860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lipoic acid synthase 1
Curator
Summary (TAIR10)
LIP1,Lipoic acid synthase,
Computational
Description (TAIR10)
LIPOIC ACID SYNTHASE 1 (LIP1); FUNCTIONS IN: lipoic acid synthase activity; INVOLVED IN: lipoic acid biosynthetic process, glycine catabolic process; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Lipoate synthase (InterPro:IPR003698), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: lipoic acid synthase family protein (TAIR:AT5G08415.1); Has 5683 Blast hits to 5683 proteins in 1186 species: Archae - 36; Bacteria - 2370; Metazoa - 113; Fungi - 91; Plants - 53; Viruses - 0; Other Eukaryotes - 3020 (source: NCBI BLink).
Protein Annotations
BRENDA:2.8.1.8EC:2.8.1.8eggNOG:COG0320eggNOG:KOG2672
EMBL:AB007987EMBL:AC006234EMBL:AF424583EMBL:AY035143
EMBL:AY059077EMBL:CP002685EnsemblPlants:AT2G20860EnsemblPlants:AT2G20860.1
entrez:816619Gene3D:3.20.20.70GeneID:816619Genevisible:Q9ZWT1
GO:GO:0005759GO:GO:0006546GO:GO:0016992GO:GO:0046872
GO:GO:0051539Gramene:AT2G20860.1gramene_pathway:2.8.1.1gramene_pathway:PWY0-501
HAMAP:MF_00206HAMAP:MF_03128hmmpanther:PTHR10949hmmpanther:PTHR10949:SF0
HOGENOM:HOG000235998InterPro:IPR003698InterPro:IPR006638InterPro:IPR007197
InterPro:IPR013785InterPro:IPR027527InterPro:IPR031691KEGG:00785+2.8.1.8
KEGG:ath:AT2G20860KO:K03644OMA:ISANAHKPANTHER:PTHR10949
PaxDb:Q9ZWT1Pfam:PF04055Pfam:PF16881Pfam:Q9ZWT1
PhylomeDB:Q9ZWT1PIR:T44259PIRSF:PIRSF005963PRIDE:Q9ZWT1
PRO:PR:Q9ZWT1ProteinModelPortal:Q9ZWT1Proteomes:UP000006548RefSeq:NP_179682.1
SMART:SM00729SMR:Q9ZWT1STRING:3702.AT2G20860.1SUPFAM:SSF102114
TAIR:AT2G20860tair10-symbols:LIP1TIGRfam:TIGR00510TIGRFAMs:TIGR00510
UniGene:At.21247UniPathway:UPA00538UniProt:Q9ZWT1
Coordinates (TAIR10) chr2:+:8979636..8980983
Molecular Weight (calculated) 41346.70 Da
IEP (calculated) 8.46
GRAVY (calculated) -0.38
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MHSRSALLYR FLRPASRCFS SSSAVTPVTV TQSPKSLEAL RARLANESPS LTDFIHGDTY SVEVGTKKKP LPKPKWMKES IPGGERYVQI KKKLRDLKLH
101: TVCEEAKCPN LGECWSGGET GTATATIMIL GDTCTRGCRF CNVKTSRTPP PPDPNEPNNV AEAIASWGVD YVVITSVDRD DLPDQGSGHF AETVQRLKFL
201: KPEMLIEALV PDFRGDGGCV EKVSKSGLDV LAHNIETVEE LQSFVRDHRA NFKQSLDVLR MAKEYAPAGT LTKTSVMLGC GETPDQVVKT MEKVRAAGVD
301: VMTFGQYMRP SKRHMPVAEY VTPDAFERYR LLGMEMGFRY VASGPMVRSS YKAGEYYIKS MIEADRVASP STSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)