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AT1G33330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.735
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Class I peptide chain release factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Class I peptide chain release factor; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 2 (TAIR:AT1G56350.1); Has 14711 Blast hits to 14711 proteins in 2768 species: Archae - 0; Bacteria - 10081; Metazoa - 256; Fungi - 228; Plants - 204; Viruses - 13; Other Eukaryotes - 3929 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1186eggNOG:ENOG410IPQ8EMBL:AC027035EMBL:AK117494
EMBL:BT006129EMBL:CP002684EnsemblPlants:AT1G33330EnsemblPlants:AT1G33330.1
entrez:840227Gene3D:3.30.160.20GeneID:840227GO:GO:0003747
GO:GO:0009507Gramene:AT1G33330.1hmmpanther:PTHR11075HOGENOM:HOG000152202
InterPro:IPR000352InterPro:IPR014720KEGG:ath:AT1G33330OMA:QHRNKRD
Pfam:PF00472PhylomeDB:Q9C875Proteomes:UP000006548RefSeq:NP_174601.2
SMR:Q9C875STRING:3702.AT1G33330.1SUPFAM:SSF75620TAIR:AT1G33330
UniGene:At.28050UniProt:Q9C875
Coordinates (TAIR10) chr1:+:12084968..12086238
Molecular Weight (calculated) 27647.50 Da
IEP (calculated) 10.78
GRAVY (calculated) -0.16
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIMAVAALF HARFPLLLRR SIPLLSAPTS VIYNHRTLLS DGLSTRLCSI LRYSSSDGVN GGSSGGDFGN DNDSVSVVSD VQSPNYLKFT DEELMKQCRL
101: ETFRVSGPGG QHRNKRDSAV RLKHLPTGIV AQAVEDRSQH KNRASALNRL RTLLAIKVRN KVDIEAYAPP PELLQILPPK STIRTSSGSQ IGPNNPKFVP
201: GMQALLDVIS ASDGSIADSA KLLGLSTGGL SRLILSHDGL RMAVNSMRAA KGIKPLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)