AT5G57930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Arabidopsis thaliana protein of unknown function (DUF794) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
ACCUMULATION OF PHOTOSYSTEM ONE 2 | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ACCUMULATION OF PHOTOSYSTEM ONE 2 (APO2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF794) (TAIR:AT1G64810.2); Has 141 Blast hits to 119 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23454690..23456354 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49940.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.03 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||
| Length | 440 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSITYSAISF SGFSPKSVPF AIHSVTRRQF LNPNTFYRFG FSPSLQGSSI EFSLQLNSRV VLSKERRSLP LVVRNDRPQN EDLPKQYTRR EKKPFPVPIV 101: DLRRAARERV KNNKDKPKRP LPPPKNGMVV KSLVPLAYKV YNARIRLINN LHRLMKVVRV NACGWCNEIH VGPYGHPFKS CKGPNTSQRK GLHEWTNSVI 201: EDVIVPLEAY HLFDRLGKRI RHDERFSIPR VPAVVELCIQ GGVEIPEFPA KRRRKPIIRI GKSEFVDADE TELPDPEPQP PPVPLLTELP VSEITPPSSE 301: EETVSLAEET LQAWEEMRAG AKKLMRMYRV RVCGYCPEVH VGPTGHKAQN CGAFKHQQRN GQHGWQSAVL DDLIPPRYVW HVPDVNGPPM QRELRSFYGQ 401: APAVVEICAQ AGAVVPEHYR ATMRLEVGIP SSVKEAEMVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)