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AT1G54350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ABC transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: peroxisomal ABC transporter 1 (TAIR:AT4G39850.3); Has 196809 Blast hits to 191927 proteins in 3574 species: Archae - 3050; Bacteria - 158969; Metazoa - 4367; Fungi - 3288; Plants - 2549; Viruses - 3; Other Eukaryotes - 24583 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G54350-MONOMERBioGrid:27101EC:3.6.3.-eggNOG:COG4178
eggNOG:KOG0060EMBL:AC005287EMBL:BT012226EMBL:BT012413
EMBL:CP002684EnsemblPlants:AT1G54350EnsemblPlants:AT1G54350.1entrez:841876
Gene3D:3.40.50.300GeneID:841876Genevisible:Q6NLC1GO:GO:0005524
GO:GO:0009507GO:GO:0016021GO:GO:0042626Gramene:AT1G54350.1
hmmpanther:PTHR11384hmmpanther:PTHR11384:SF3HOGENOM:HOG000255119InterPro:IPR003439
InterPro:IPR003593InterPro:IPR011527InterPro:IPR017871InterPro:IPR027417
KEGG:ath:AT1G54350OMA:WFINNIGPaxDb:Q6NLC1Pfam:PF00005
Pfam:PF06472Pfam:Q6NLC1Pfscan:PS50893Pfscan:PS50929
PhylomeDB:Q6NLC1PIR:B96585PRIDE:Q6NLC1PRO:PR:Q6NLC1
PROSITE:PS00211PROSITE:PS50893PROSITE:PS50929ProteinModelPortal:Q6NLC1
Proteomes:UP000006548RefSeq:NP_175837.2scanprosite:PS00211SMART:SM00382
SMR:Q6NLC1STRING:3702.AT1G54350.1SUPFAM:SSF52540SUPFAM:SSF90123
TAIR:AT1G54350TCDB:3.A.1.203.8TMHMM:TMhelixUniGene:At.37230
UniProt:Q6NLC1
Coordinates (TAIR10) chr1:+:20286917..20290245
Molecular Weight (calculated) 80058.50 Da
IEP (calculated) 6.02
GRAVY (calculated) -0.21
Length 706 amino acids
Sequence (TAIR10)
(BLAST)
001: MILMITAPVC PPHLLLRHSS LLRHESSIGN FHRKKNPRFR TVSCSSLLPQ PSVRPDKASE LKTLWKKFYK VASPYWFSED KDQARLRLAA VFALTLATTG
101: ISVGFNFLGR DFYNSLANKD QEQFTKQLFY YLCAFAGGIP FFVLRDYTKE TLSLRWRSWM TKYYLQRYLK DQTFYKIQSQ SIIDNPDQRL VDDLSSFTGT
201: ALSFSLTLVN ATIDLISFSN ILFTIYPPLF LVLLLYSFGG TAISVFLGKG LVNLNFLQEK KEADFRYSLV RVRENAESIA FYGGEQNEMQ LLLQRFRSAF
301: DNLTELLIAS RNLEFFTDGY RYLIQILPVA VVAPMYFSGK IEFGVINQSV SAFNHILGDF SLVVYQFQAI SSFSAVIDRL GEFDDLLDNN IFRDPSDTVD
401: EIELTYQSEM NSSLLDTNGS IKSQPNQKRL EIEELTLQTP TNGTTLVHNL SADVYDKDHL LIMGPSGSGK TSLLRAMAGL WRSGKGKITF YLDPEVDFTQ
501: EKSDTQENSG KRGDVLFLPQ RPYMVLGSLR QQLLYPTWSA TVEETTPGGS NIDGSPPLLI REDGNEKPTT DDLMRTLEKV CLGHIADRFG GLDSIHEWSS
601: VLSLGEQQRL AFARLLLSQP KLALLDESTS ALDEANEAFL YQQIQSAGIT YISIGHRRTL TKFHNKILQI STADPKSNER NWRIEDVDAQ DSLYGRLNQK
701: EVPSES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)