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AT5G13650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : elongation factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT2G31060.2); Has 77233 Blast hits to 68351 proteins in 6199 species: Archae - 1276; Bacteria - 48297; Metazoa - 3947; Fungi - 2455; Plants - 1903; Viruses - 1; Other Eukaryotes - 19354 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1217eggNOG:ENOG410INHTEMBL:CP002688EnsemblPlants:AT5G13650
EnsemblPlants:AT5G13650.1entrez:831209ExpressionAtlas:F4K410Gene3D:3.30.70.240
Gene3D:3.40.50.300GeneID:831209GO:GO:0003746GO:GO:0003924
GO:GO:0005525Gramene:AT5G13650.1hmmpanther:PTHR23115hmmpanther:PTHR23115:SF165
InterPro:IPR000640InterPro:IPR000795InterPro:IPR004161InterPro:IPR005225
InterPro:IPR006298InterPro:IPR009000InterPro:IPR009022InterPro:IPR027417
InterPro:IPR031157PaxDb:F4K410Pfam:PF00009Pfam:PF00679
Pfam:PF03144Pfscan:PS51722PRIDE:F4K410PRINTS:PR00315
PROSITE:PS00301PROSITE:PS51722ProteinModelPortal:F4K410Proteomes:UP000006548
RefSeq:NP_851035.1scanprosite:PS00301SMART:SM00838SMR:F4K410
STRING:3702.AT5G13650.2SUPFAM:SSF50447SUPFAM:SSF52540SUPFAM:SSF54980
TAIR:AT5G13650TIGRfam:TIGR00231TIGRfam:TIGR01394TIGRFAMs:TIGR00231
TIGRFAMs:TIGR01394UniGene:At.21627UniProt:F4K410
Coordinates (TAIR10) chr5:+:4397821..4402364
Molecular Weight (calculated) 74319.50 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.26
Length 675 amino acids
Sequence (TAIR10)
(BLAST)
001: MELSLSTSSA SPAVLRRQAS PLLHKQQVLG VSFASALKPG GGALRFPSRR PLPRPITCSA SPSTAEPASE VKKKQLDRRD NVRNIAIVAH VDHGKTTLVD
101: SMLRQAKVFR DNQVMQERIM DSNDLERERG ITILSKNTSI TYKNTKVNII DTPGHSDFGG EVERVLNMVD GVLLVVDSVE GPMPQTRFVL KKALEFGHAV
201: VVVVNKIDRP SARPEFVVNS TFELFIELNA TDEQCDFQAI YASGIKGKAG LSPDDLAEDL GPLFEAIIRC VPGPNIEKDG ALQMLATNIE YDEHKGRIAI
301: GRLHAGVLRK GMDVRVCTSE DSCRFARVSE LFVYEKFYRV PTDSVEAGDI CAVCGIDNIQ IGETIADKVH GKPLPTIKVE EPTVKMSFSV NTSPFSGREG
401: KYVTSRNLRD RLNRELERNL AMKVEDGETA DTFIVSGRGT LHITILIENM RREGYEFMVG PPKVINKRVN DKLLEPYEIA TVEVPEAHMG PVVELLGKRR
501: GQMFDMQGVG SEGTTFLRYK IPTRGLLGLR NAILTASRGT AILNTVFDSY GPWAGDISTR DLGSLVAFED GTSTSYALAS AQERGQMFVG SGVDVYKGQI
601: VGIHQRPGDL GLNICKKKAA TNIRSNKDVT VILDTPLTYS LDDCIEYIEE DELVEVTPSS IRMCKNQKMA KKGRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)