AT1G67840.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : chloroplast sensor kinase | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
chloroplast sensor kinase (CSK); CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594); Has 698 Blast hits to 698 proteins in 263 species: Archae - 2; Bacteria - 628; Metazoa - 0; Fungi - 1; Plants - 41; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:25434156..25436839 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 66846.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.30 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 611 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MLLSAIASQT LLSSNPNLHF SNSIPNPRPS NPSLKLLNAS SSSSSSSSSS IFTRGLRYVN HTVSNEESEP GGGETMVASA SAIASAIRGA STTPVEFTQM 101: IEKDHLKTKI ILPSPDFQRL CLEQLDLFRQ IVDPNAVLSI YVRPAGSYVM DRLELRRVTC YPSVNAGDVV ILVGNFGIPA GLRAAEASLS SQQVELVSKH 201: RAAVFPMVKH PFVVGFLVAE LPVEAEEEEE EEEEEKPHGV NQFLSPEEAY ALPASANTKS PRVKLPSVKV FTEEQRSYAI NISRTLAMAY VMDQKTMLLQ 301: QSSWQNNVRM SKLVEQIRGP LSTMRTLSKM LSTHTKRNQI SHDIVEDLIV QGDQIKDTLE ELQDAVHLTK ANIVRHNEEA LKKINKTHNE TRRSKYEHKD 401: PIDGSQISST RLSLGSGLDD SEMPMPPLAL APLQMHSIRP CDISNVLLDM VETVRPLALT QQRVVELGEN SASLQVAVEE PALRQALSNL IEGALLRTHV 501: GGKVEILSTR APAGGSLVVI DDDGPDMRYM TQMHSLTPFG AELLSENMVE DNMTWNFVAG LTVAREILES YGCVIRVISP RSSDAALGAG GTRVELWLPA 601: FPAAVSEANE A |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)