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AT2G21340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G39030.1); Has 7799 Blast hits to 7783 proteins in 1733 species: Archae - 152; Bacteria - 6456; Metazoa - 30; Fungi - 49; Plants - 387; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AC006841EMBL:AK226345
EMBL:AY062577EMBL:AY086052EMBL:AY128797EMBL:CP002685
EnsemblPlants:AT2G21340EnsemblPlants:AT2G21340.1entrez:816673ExpressionAtlas:Q8W4G3
GeneID:816673Genevisible:Q8W4G3GO:GO:0009507GO:GO:0009941
GO:GO:0015238GO:GO:0015297GO:GO:0016021GO:GO:0031969
hmmpanther:PTHR11206hmmpanther:PTHR11206:SF116HOGENOM:HOG000029977InParanoid:Q8W4G3
InterPro:IPR002528KEGG:ath:AT2G21340OMA:NKRGFRAPaxDb:Q8W4G3
Pfam:PF01554Pfam:Q8W4G3PhylomeDB:Q8W4G3PIR:B84600
PRIDE:Q8W4G3PRO:PR:Q8W4G3ProteinModelPortal:Q8W4G3Proteomes:UP000006548
RefSeq:NP_565509.4STRING:3702.AT2G21340.1TAIR:AT2G21340TIGRfam:TIGR00797
TIGRFAMs:TIGR00797TMHMM:TMhelixUniGene:At.27297UniProt:Q8W4G3
Coordinates (TAIR10) chr2:+:9132629..9136236
Molecular Weight (calculated) 60003.80 Da
IEP (calculated) 8.02
GRAVY (calculated) 0.53
Length 559 amino acids
Sequence (TAIR10)
(BLAST)
001: MQIQCKTLTF TVSSIPCNPK LPFPSSLTLR SWNPSFPSFR SSAVSGPKSS LKLNRFLRNC ASTNQELVVD GETGNGSISE LQGDAANGSI SPVEVEAEVE
101: EVKVDDLATQ SIWGQMKEIV MFTGPAAGLW LCGPLMSLID TAVIGQGSSL ELAALGPATV ICDYLCYTFM FLSVATSNLV ATSLARQDKD EVQHQISILL
201: FIGLACGVTM MVLTRLFGSW ALTAFTGVKN ADIVPAANKY VQIRGLAWPA VLIGWVAQSA SLGMKDSWGP LKALAVASAI NGVGDVVLCT FLGYGIAGAA
301: WATMVSQVVA AYMMMDALNK KGYSAFSFCV PSPSELLTIF GLAAPVFITM MSKVLFYTLL VYFATSMGTN IIAAHQVMLQ IYTMSTVWGE PLSQTAQSFM
401: PELLFGINRN LPKARVLLKS LVIIGATLGI VVGTIGTAVP WLFPGIFTRD KVVTSEMHKV IIPYFLALSI TPSTHSLEGT LLAGRDLRYI SLSMTGCLAV
501: AGLLLMLLSN GGFGLRGCWY ALVGFQWARF SLSLFRLLSR DGVLYSEDTS RYAEKVKAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)