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AT1G68660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein ClpS, core (InterPro:IPR003769), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719); Has 638 Blast hits to 638 proteins in 172 species: Archae - 0; Bacteria - 350; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-374-MONOMEReggNOG:COG2127eggNOG:ENOG410IW93EMBL:AC008075
EMBL:AF336921EMBL:AY045615EMBL:AY085795EMBL:AY120696
EMBL:CP002684EnsemblPlants:AT1G68660EnsemblPlants:AT1G68660.1EnsemblPlants:AT1G68660.2
entrez:843196ExpressionAtlas:Q9SX29Gene3D:3.30.1390.10GeneID:843196
Genevisible:Q9SX29GO:GO:0005840GO:GO:0008233GO:GO:0009570
GO:GO:0030163hmmpanther:PTHR33473hmmpanther:PTHR33473:SF4HOGENOM:HOG000247050
InterPro:IPR003769InterPro:IPR014719KEGG:ath:AT1G68660KO:K06891
OMA:TAICGRVPaxDb:Q9SX29Pfam:PF02617PhylomeDB:Q9SX29
PIR:B96711PRIDE:A8MS26ProteinModelPortal:Q9SX29Proteomes:UP000006548
RefSeq:NP_001077794.1RefSeq:NP_564937.1SMR:Q9SX29STRING:3702.AT1G68660.1
SUPFAM:SSF54736TAIR:AT1G68660UniGene:At.24277UniGene:At.66838
UniProt:Q9SX29
Coordinates (TAIR10) chr1:-:25778058..25779083
Molecular Weight (calculated) 17001.80 Da
IEP (calculated) 8.50
GRAVY (calculated) -0.06
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: METAICGRLA LAPSSLFNSK SGDKHLVSKG PCVNRSILMT LSTSAALGKG GGVLDKPIIE KTTPGRESEF DLRKSKKIAP PYRVILHNDN FNKREYVVQV
101: LMKVIPGMTV DNAVNIMQEA HINGLAVVIV CAQADAEQHC MQLRGNGLLS SVEPDGGGC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)