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AT2G47910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chlororespiratory reduction 6
Curator
Summary (TAIR10)
Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.
Computational
Description (TAIR10)
chlororespiratory reduction 6 (CRR6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NAD(P)H dehydrogenase complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1817 (InterPro:IPR014946); Has 166 Blast hits to 166 proteins in 69 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5474eggNOG:ENOG410IFYBEMBL:AC005309EMBL:AC006072
EMBL:AF324707EMBL:AF339704EMBL:AY045692EMBL:AY054146
EMBL:AY084309EMBL:CP002685EnsemblPlants:AT2G47910EnsemblPlants:AT2G47910.1
entrez:819403ExpressionAtlas:O82258GeneID:819403Genevisible:O82258
GO:GO:0009507GO:GO:0009535GO:GO:0009570GO:GO:0010275
hmmpanther:PTHR35724hmmpanther:PTHR35724:SF1HOGENOM:HOG000242602InParanoid:O82258
InterPro:IPR014946iPTMnet:O82258KEGG:ath:AT2G47910OMA:HQMSMRH
PaxDb:O82258Pfam:PF08847PhylomeDB:O82258PIR:A84921
PRIDE:O82258PRO:PR:O82258Proteomes:UP000006548RefSeq:NP_566113.1
STRING:3702.AT2G47910.1TAIR:AT2G47910tair10-symbols:CRR6UniGene:At.20688
UniProt:O82258
Coordinates (TAIR10) chr2:+:19614741..19615559
Molecular Weight (calculated) 28029.80 Da
IEP (calculated) 5.16
GRAVY (calculated) -0.18
Length 246 amino acids
Sequence (TAIR10)
(BLAST)
001: MATKAVLLPW LIPSPRHVSL FPVVQLPALE TAGWCVRKRR AEDVAVSVAF NPSGNFDISA FENDQDSDKV EPPMPPTTGR YEVVIDNDSI GRLDLSPFQR
101: AIGITSPDDF GVAEPKRYLD RTIGFTINYK REDPGDPREL SEYPDVRLWF VRLDAMYPWL PLLLDWRAGE LARYAAMLVP HQMSLRMGVV FNPEALELFV
201: MNKVFVVYPW LKRHGVPKPR LKTSDMARML GFGIGDELFD LIDHNE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)