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AT5G52780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3464)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3464); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3464 (InterPro:IPR021855); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3464) (TAIR:AT4G19100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1MReggNOG:ENOG410YU1HEMBL:AB025606EMBL:AK228908
EMBL:AY086617EMBL:BT025520EMBL:CP002688EnsemblPlants:AT5G52780
EnsemblPlants:AT5G52780.1entrez:835355GeneID:835355Genevisible:Q9LTD9
GO:GO:0009507GO:GO:0009535GO:GO:0016021Gramene:AT5G52780.1
hmmpanther:PTHR34575hmmpanther:PTHR34575:SF1HOGENOM:HOG000006323InParanoid:Q9LTD9
InterPro:IPR021855KEGG:ath:AT5G52780OMA:KENWVEMPaxDb:Q9LTD9
Pfam:PF11947Pfam:Q9LTD9PhylomeDB:Q9LTD9PRIDE:Q9LTD9
PRO:PR:Q9LTD9Proteomes:UP000006548RefSeq:NP_200090.1STRING:3702.AT5G52780.1
TAIR:AT5G52780TMHMM:TMhelixUniGene:At.29595UniProt:Q9LTD9
Coordinates (TAIR10) chr5:-:21390943..21391449
Molecular Weight (calculated) 18749.60 Da
IEP (calculated) 9.78
GRAVY (calculated) -0.42
Length 168 amino acids
Sequence (TAIR10)
(BLAST)
001: MRALLCSHRL LPLSSLSRTT VKTKSHNPKT LYPNNKPRWE SKLHAGPKGF QSSRTSEKPG RPDPDPEDDP PIPQEVFERM MGRIVVSVGT PLGLGVAILK
101: VLEVLKDRNV WDVPLWVPYL TTLVTFGSSA LGIAYGSLST NLDPAKTNSL FGLKEAKENW VEMWKEDQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)