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AT2G47840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22923678 (2012): plastid
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:16618929 (2006): unclear
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Uncharacterised conserved protein ycf60
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised conserved protein ycf60; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55710.1); Has 358 Blast hits to 358 proteins in 92 species: Archae - 0; Bacteria - 125; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
Protein Annotations
BioGrid:4731eggNOG:ENOG410IXSAeggNOG:ENOG4111UMDEMBL:AC005309
EMBL:AY050346EMBL:AY094045EMBL:CP002685EnsemblPlants:AT2G47840
EnsemblPlants:AT2G47840.1entrez:819396GeneID:819396Genevisible:O82251
GO:GO:0005739GO:GO:0009507GO:GO:0009536GO:GO:0009706
GO:GO:0009941GO:GO:0015031GO:GO:0016021Gramene:AT2G47840.1
hmmpanther:PTHR33510hmmpanther:PTHR33510:SF1HOGENOM:HOG000012384InParanoid:O82251
IntAct:O82251InterPro:IPR005691KEGG:ath:AT2G47840OMA:QYGRFLF
PaxDb:O82251Pfam:O82251Pfam:PF16166PhylomeDB:O82251
PIR:B84920PRIDE:O82251PRO:PR:O82251Proteomes:UP000006548
RefSeq:NP_566112.1STRING:3702.AT2G47840.1TAIR:AT2G47840TMHMM:TMhelix
UniGene:At.12945UniProt:O82251
Coordinates (TAIR10) chr2:-:19594331..19594957
Molecular Weight (calculated) 22913.20 Da
IEP (calculated) 10.51
GRAVY (calculated) 0.46
Length 208 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLCLSLHQ TLTNPLSAPR CRPLSLSFPG SSTFSIRPSS RRATALTTRA SYTPTPATER VISIASYALP FFNSLQYGRF LFAQYPRLGL LFEPIFPILN
101: LYRSVPYASF VAFFGLYLGV VRNTSFSRYV RFNAMQAVTL DVLLAVPVLL TRILDPGQGG GFGMKAMMWG HTGVFVFSFM CFVYGVVSSL LGKTPYIPFV
201: ADAAGRQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)