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AT1G79870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D-isomer specific 2-hydroxyacid dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 29704 Blast hits to 29696 proteins in 2729 species: Archae - 468; Bacteria - 18164; Metazoa - 733; Fungi - 1180; Plants - 594; Viruses - 5; Other Eukaryotes - 8560 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G79870-MONOMERBioCyc:ARA:GQT-1734-MONOMERBRENDA:1.1.1.81EC:1.1.1.79
EC:1.1.1.81eggNOG:COG1052eggNOG:KOG0069EMBL:AC011717
EMBL:AY069901EMBL:AY088166EMBL:AY113022EMBL:CP002684
EnsemblPlants:AT1G79870EnsemblPlants:AT1G79870.1entrez:844326Gene3D:3.40.50.720
GeneID:844326Genevisible:Q9CA90GO:GO:0005737GO:GO:0005829
GO:GO:0009854GO:GO:0016618GO:GO:0030267GO:GO:0051287
hmmpanther:PTHR10996hmmpanther:PTHR10996:SF139HOGENOM:HOG000136700InParanoid:Q9CA90
InterPro:IPR006139InterPro:IPR006140InterPro:IPR016040InterPro:IPR029752
KEGG:ath:AT1G79870KO:K15919OMA:QRTKQDHPaxDb:Q9CA90
Pfam:PF00389Pfam:PF02826Pfam:Q9CA90PhylomeDB:Q9CA90
PIR:G96829PRIDE:Q9CA90PRO:PR:Q9CA90PROSITE:PS00065
ProteinModelPortal:Q9CA90Proteomes:UP000006548RefSeq:NP_001185444.1RefSeq:NP_178105.1
scanprosite:PS00065SMR:Q9CA90STRING:3702.AT1G79870.1SUPFAM:SSF51735
SUPFAM:SSF52283TAIR:AT1G79870UniGene:At.27554UniProt:Q9CA90
Coordinates (TAIR10) chr1:+:30044794..30045851
Molecular Weight (calculated) 34163.40 Da
IEP (calculated) 5.70
GRAVY (calculated) 0.05
Length 313 amino acids
Sequence (TAIR10)
(BLAST)
001: MESIGVLMMC PMSSYLENEL EKRFNLLRFW TSPEKSVLLE THRNSIRAVV GNASAGADAQ LISDLPNLEI VSSFSVGLDK IDLGKCKEKG IRVTNTPDVL
101: TEDVADLAIG LILALLRRLC ECDRYVRSGK WKQGEFQLTT KFSGKSVGII GLGRIGTAIA KRAEAFSCPI NYYSRTIKPD VAYKYYPTVV DLAQNSDILV
201: VACPLTEQTR HIVDRQVMDA LGAKGVLINI GRGPHVDEQE LIKALTEGRL GGAALDVFEQ EPHVPEELFG LENVVLLPHV GSGTVETRNA MADLVVGNLE
301: AHFSGKSLLT PVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)