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AT4G38460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : geranylgeranyl reductase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
geranylgeranyl reductase (GGR); INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: geranylgeranyl pyrophosphate synthase 1 (TAIR:AT4G36810.1); Has 14555 Blast hits to 14554 proteins in 2890 species: Archae - 343; Bacteria - 9127; Metazoa - 134; Fungi - 165; Plants - 435; Viruses - 12; Other Eukaryotes - 4339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0142eggNOG:KOG0776EMBL:AF324662EMBL:AF326906
EMBL:AF339725EMBL:AF372915EMBL:AL035540EMBL:AL161593
EMBL:AY057734EMBL:AY086829EMBL:CP002687EMBL:L40577
EnsemblPlants:AT4G38460EnsemblPlants:AT4G38460.1entrez:830002Gene3D:1.10.600.10
GeneID:830002Genevisible:Q39108GO:GO:0009507GO:GO:0042651
GO:GO:0043693GO:GO:0046872Gramene:AT4G38460.1gramene_plant_reactome:1119526
gramene_plant_reactome:1119545gramene_plant_reactome:6874186hmmpanther:PTHR12001hmmpanther:PTHR12001:SF41
HOGENOM:HOG000009101InParanoid:Q39108IntAct:Q39108InterPro:IPR000092
InterPro:IPR008949InterPro:IPR017446KEGG:ath:AT4G38460KO:K13789
ncoils:CoilOMA:PLGFQHIPANTHER:PTHR12001PaxDb:Q39108
Pfam:PF00348Pfam:Q39108PhylomeDB:Q39108PIR:T05674
PRIDE:Q39108PRO:PR:Q39108PROSITE:PS00723ProteinModelPortal:Q39108
Proteomes:UP000006548RefSeq:NP_195558.1scanprosite:PS00723SMR:Q39108
STRING:3702.AT4G38460.1SUPFAM:SSF48576TAIR:AT4G38460tair10-symbols:GGR
UniGene:At.20379UniProt:Q39108
Coordinates (TAIR10) chr4:+:17994849..17995974
Molecular Weight (calculated) 35190.50 Da
IEP (calculated) 6.04
GRAVY (calculated) -0.03
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MLFSGSAIPL SSFCSLPEKP HTLPMKLSPA AIRSSSSSAP GSLNFDLRTY WTTLITEINQ KLDEAIPVKH PAGIYEAMRY SVLAQGAKRA PPVMCVAACE
101: LFGGDRLAAF PTACALEMVH AASLIHDDLP CMDDDPVRRG KPSNHTVYGS GMAILAGDAL FPLAFQHIVS HTPPDLVPRA TILRLITEIA RTVGSTGMAA
201: GQYVDLEGGP FPLSFVQEKK FGAMGECSAV CGGLLGGATE DELQSLRRYG RAVGMLYQVV DDITEDKKKS YDGGAEKGMM EMAEELKEKA KKELQVFDNK
301: YGGGDTLVPL YTFVDYAAHR HFLLPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)