AT4G27990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : YGGT family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
YLMG1-2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function YGGT (InterPro:IPR003425); BEST Arabidopsis thaliana protein match is: YGGT family protein (TAIR:AT3G07430.1); Has 788 Blast hits to 788 proteins in 294 species: Archae - 0; Bacteria - 510; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:13923991..13924647 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 23706.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.80 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.39 | ||||||||||||||||||||||||||||||||||||||||
| Length | 218 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASFTTNSLA LRASILANPR LPPPIIRPRL SLPRKLSFNL SLHNARTIVS SAVTSSSPVL SSKPPSQFPF SDSTRSITTL VLLAGVVIKS LIQKLSVAIV 101: NLSPQIQASF RTASPLFFAS LRDRPAGYLN TPLTVVAAGL SKWLDIYSGV LMVRVLLSWF PNIPWDRQPL SAIRDLCDPY LNLFRNIIPP VFDTLDVSPL 201: LAFAVLGTLG SILNNSRG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)