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AT5G64280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : dicarboxylate transporter 2.2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
dicarboxylate transporter 2.2 (DiT2.2); FUNCTIONS IN: oxoglutarate:malate antiporter activity; INVOLVED IN: malate transport, sodium ion transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/sulphate symporter (InterPro:IPR001898); BEST Arabidopsis thaliana protein match is: dicarboxylate transport 2.1 (TAIR:AT5G64290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21791eggNOG:COG0471eggNOG:ENOG410JVD5EMBL:AB008268
EMBL:AY045893EMBL:AY133825EMBL:CP002688EnsemblPlants:AT5G64280
EnsemblPlants:AT5G64280.1entrez:836549GeneID:836549Genevisible:Q9FMF8
GO:GO:0006814GO:GO:0009536GO:GO:0009706GO:GO:0015131
GO:GO:0015140GO:GO:0015729GO:GO:0016021GO:GO:0071423
GO:GO:1902356Gramene:AT5G64280.1hmmpanther:PTHR10283hmmpanther:PTHR10283:SF106
HOGENOM:HOG000117912InParanoid:Q9FMF8InterPro:IPR001898iPTMnet:Q9FMF8
KEGG:ath:AT5G64280OMA:ISIMAWHPaxDb:Q9FMF8Pfam:PF00939
Pfam:Q9FMF8PhylomeDB:Q9FMF8PRIDE:Q9FMF8PRO:PR:Q9FMF8
ProteinModelPortal:Q9FMF8Proteomes:UP000006548RefSeq:NP_201233.1STRING:3702.AT5G64280.1
TAIR:AT5G64280tair10-symbols:DiT2.2TIGRfam:TIGR00785TIGRFAMs:TIGR00785
TMHMM:TMhelixUniGene:At.23742UniProt:Q9FMF8
Coordinates (TAIR10) chr5:-:25711330..25713411
Molecular Weight (calculated) 58750.70 Da
IEP (calculated) 9.62
GRAVY (calculated) 0.65
Length 549 amino acids
Sequence (TAIR10)
(BLAST)
001: MESLALRSIS LSASYLSLHR SSSKSFALLP PSISVHTSPT LRSLSISSPR FTLRATASSL PEEQNKPQPP PPSPPQPQGA KLIPLAISVS IGLIVRFLIP
101: RPEQVTSQGW QLLSIFLFTI SGLVLGPLPV GAWAFIGLTA SIVTKTLPFS TAFAAFTNEL IWLIAISFFF ARGFIKTGLG DRIATYFVKW LGKSTLGLSY
201: GLAFCETLMG LIMPSTMARA GGVFLPVIKS LAISAGSYPG DPSSRKLGSF LIQTQLQCSG ASGAILLTSA AQNLLCLKLA REVGVVISNP WITWFKVASV
301: PAFVSLLCTP LIIYKLYPPE LKHTPEAPAA AAKKLERLGP ITKNEWIMLG AMAFTVSLWV FGEAIGIASV VSAMIGLSTL LLLGVINWDD CLSDKSAWDS
401: LTWFAVLIGM AGQLTNLGVV AWMSDCVAKL LQSLSLTWPA SFIILQACYL LIHYLFASQT GHAGALYPPF LAMQIAAGVP GVLAALCLAF NNNLSGALAH
501: YSGGPAALYY GAGYVDLRDM FRVGFVMALV QAIIWGGVGS FWWKFLGLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)