AT2G20920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3353) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF3353); LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3353 (InterPro:IPR021788); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3353) (TAIR:AT5G23040.1); Has 244 Blast hits to 243 proteins in 75 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:8998728..8999789 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30481.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.12 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||||||||||||||||||
| Length | 287 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATAALSAAR PNRLSSASSD VPLHPLYLPT KLQFPSRKTQ LWRSAAILLP TRRRCAPPRA SSRADDSPPF DMSVETALKV LGVSEGASFD EILRAKKSIL 101: ASRKDDPNAI SQAEAAYDML LMQSLNQRRA GKVVSNNIRY ADVKSSNPLG TSTVTQWMKN PPVSVDMPST SDLGIQAGVY GAMMVLTYVN GSSFESSGMP 201: YAGADVPGLI LASSFGASLY FMTKKKVKLG KAAALTAGGL VAGAVVGSAI ETWLHVDVVP FLGLHSPAAV VSEFIVFSQF LVSLCLR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)