AT2G42750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNAJ heat shock N-terminal domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G23240.1); Has 17700 Blast hits to 17698 proteins in 3061 species: Archae - 180; Bacteria - 8514; Metazoa - 2668; Fungi - 1485; Plants - 1554; Viruses - 15; Other Eukaryotes - 3284 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17793404..17795419 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38824.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 344 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAQILSPVCT DLLKFQNSAL SSRSGASPRF SAKTTGASSS WYLPRYAGKR RTDSIGRLRV ATEDASSLST GDVADDYYAV LGLLPDATQE EIKKAYYNCM 101: KSCHPDLSGN DPETTNFCMF INDIYEILSD PVQRMVYDEI HGYTVTAINP FLDDSTPRDH VFVDEFACIG CKNCANVAPD IFQIEEDFGR ARACNQRGNP 201: DLVQQAVETC PVDCIHQTSA AQLSLLEDEM RRVERVNVAL MLSGMGSGAV DVFRMARSRW EKRQAKVLNQ ARSRMMKRKN TDETPSYWDN LWGKQNEYQK 301: SEEEVQERAQ RAAAAARRWR EYSRRGVDKR PTFKLPDSAS RGDN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)