AT4G16370.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : oligopeptide transporter | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes an oligopeptide transporter involved in metal homeostasis. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
oligopeptide transporter (OPT3); CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 2 (TAIR:AT1G09930.1); Has 1146 Blast hits to 1125 proteins in 109 species: Archae - 0; Bacteria - 26; Metazoa - 0; Fungi - 775; Plants - 337; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:9247514..9250071 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 82445.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.19 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.40 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 737 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDAEKATDKT NVHLSSDHER CPVEEVALVV PETDDPSLPV MTFRAWFLGL TSCVLLIFLN TFFTYRTQPL TISAILMQIA VLPIGKFMAR TLPTTSHNLL 101: GWSFSLNPGP FNIKEHVIIT IFANCGVAYG GGDAYSIGAI TVMKAYYKQS LSFICGLFIV LTTQILGYGW AGILRRYLVD PVDMWWPSNL AQVSLFRALH 201: EKENKSKGLT RMKFFLVALG ASFIYYALPG YLFPILTFFS WVCWAWPNSI TAQQVGSGYH GLGVGAFTLD WAGISAYHGS PLVAPWSSIL NVGVGFIMFI 301: YIIVPVCYWK FNTFDARKFP IFSNQLFTTS GQKYDTTKIL TPQFDLDIGA YNNYGKLYLS PLFALSIGSG FARFTATLTH VALFNGRDIW KQTWSAVNTT 401: KLDIHGKLMQ SYKKVPEWWF YILLAGSVAM SLLMSFVWKE SVQLPWWGML FAFALAFIVT LPIGVIQATT NQQPGYDIIG QFIIGYILPG KPIANLIFKI 501: YGRISTVHAL SFLADLKLGH YMKIPPRCMY TAQLVGTVVA GVVNLGVAWW MLESIQDICD IEGDHPNSPW TCPKYRVTFD ASVIWGLIGP RRLFGPGGMY 601: RNLVWLFLIG AVLPVPVWAL SKIFPNKKWI PLINIPVISY GFAGMPPATP TNIASWLVTG TIFNYFVFNY HKRWWQKYNY VLSAALDAGT AFMGVLLFFA 701: LQNAGHDLKW WGTEVDHCPL ASCPTAPGIK AKGCPVF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)