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AT4G16370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22318864 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : oligopeptide transporter
Curator
Summary (TAIR10)
Encodes an oligopeptide transporter involved in metal homeostasis.
Computational
Description (TAIR10)
oligopeptide transporter (OPT3); CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 2 (TAIR:AT1G09930.1); Has 1146 Blast hits to 1125 proteins in 109 species: Archae - 0; Bacteria - 26; Metazoa - 0; Fungi - 775; Plants - 337; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNZCeggNOG:KOG2262EMBL:AL161543EMBL:AY054590
EMBL:BT002023EMBL:CP002687EMBL:Z97341EnsemblPlants:AT4G16370
EnsemblPlants:AT4G16370.1entrez:827332GeneID:827332Genevisible:O23482
GO:GO:0007275GO:GO:0015031GO:GO:0015833GO:GO:0016021
GO:GO:0055085Gramene:AT4G16370.1hmmpanther:PTHR22601hmmpanther:PTHR22601:SF2
HOGENOM:HOG000166970InParanoid:O23482InterPro:IPR004648InterPro:IPR004813
iPTMnet:O23482KEGG:ath:AT4G16370PaxDb:O23482Pfam:O23482
Pfam:PF03169PIR:D71430PRIDE:O23482PRO:PR:O23482
Proteomes:UP000006548RefSeq:NP_567493.5STRING:3702.AT4G16370.1TAIR:AT4G16370
tair10-symbols:ATOPT3tair10-symbols:OPT3TIGRfam:TIGR00727TIGRfam:TIGR00728
TIGRFAMs:TIGR00727TIGRFAMs:TIGR00728TMHMM:TMhelixUniGene:At.4409
UniProt:O23482
Coordinates (TAIR10) chr4:-:9247514..9250071
Molecular Weight (calculated) 82445.10 Da
IEP (calculated) 9.19
GRAVY (calculated) 0.40
Length 737 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAEKATDKT NVHLSSDHER CPVEEVALVV PETDDPSLPV MTFRAWFLGL TSCVLLIFLN TFFTYRTQPL TISAILMQIA VLPIGKFMAR TLPTTSHNLL
101: GWSFSLNPGP FNIKEHVIIT IFANCGVAYG GGDAYSIGAI TVMKAYYKQS LSFICGLFIV LTTQILGYGW AGILRRYLVD PVDMWWPSNL AQVSLFRALH
201: EKENKSKGLT RMKFFLVALG ASFIYYALPG YLFPILTFFS WVCWAWPNSI TAQQVGSGYH GLGVGAFTLD WAGISAYHGS PLVAPWSSIL NVGVGFIMFI
301: YIIVPVCYWK FNTFDARKFP IFSNQLFTTS GQKYDTTKIL TPQFDLDIGA YNNYGKLYLS PLFALSIGSG FARFTATLTH VALFNGRDIW KQTWSAVNTT
401: KLDIHGKLMQ SYKKVPEWWF YILLAGSVAM SLLMSFVWKE SVQLPWWGML FAFALAFIVT LPIGVIQATT NQQPGYDIIG QFIIGYILPG KPIANLIFKI
501: YGRISTVHAL SFLADLKLGH YMKIPPRCMY TAQLVGTVVA GVVNLGVAWW MLESIQDICD IEGDHPNSPW TCPKYRVTFD ASVIWGLIGP RRLFGPGGMY
601: RNLVWLFLIG AVLPVPVWAL SKIFPNKKWI PLINIPVISY GFAGMPPATP TNIASWLVTG TIFNYFVFNY HKRWWQKYNY VLSAALDAGT AFMGVLLFFA
701: LQNAGHDLKW WGTEVDHCPL ASCPTAPGIK AKGCPVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)