AT3G18290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger protein-related | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
BRUTUS (BTS); FUNCTIONS IN: zinc ion binding; INVOLVED IN: cellular response to iron ion starvation, embryo development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G74770.1); Has 1787 Blast hits to 1677 proteins in 200 species: Archae - 0; Bacteria - 15; Metazoa - 641; Fungi - 164; Plants - 725; Viruses - 2; Other Eukaryotes - 240 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6274308..6280174 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 141474.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1254 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MATPLPDFET ARGGGAVASS STTVLPSSVS SSSSSSRPLP VANSFSDDAE EISPILIFLF FHKAVCSELE ALHRLALEFA TGHHVDLRLL RERYRFLRSI 0101: YKHHCNAEDE VIFSALDIRV KNVAQTYSLE HKGESNLFDH LFELLNSATE TDESYRRELA RSTGALQTSV SQHLAKEQKQ VFPLLIEKFK YEEQAYIVWR 0201: FLCSIPVNML AVFLPWISSS ISVDESKEMQ TCLKKIVPGE KLLQQVIFTW LGGKSNTVAS CRIEDSMFQC CLDSSSSMLP CKASREQCAC EGSKIGKRKY 0301: PELTNFGSSD TLHPVDEIKL WHKSINKEMK EIADEARKIQ LSGDFSDLSA FDERLQYIAE VCIFHSLAED KIIFPAVDGE FSFSEEHDEE ENQFNEFRCL 0401: IENIKSAGAS STSAAEFYTK LCSHADQIME TIQRHFHNEE IQVLPLARKN FSFKRQQELL YQSLCIMPLR LIERVLPWLT ASLTEDEAKN FLKNLQAGAP 0501: KSDVALVTLF SGWACKGRKA GECLSPNGNG LCPVKTLSNI KEVNLQSCNA CASVPCTSRS TKSCCQHQDK RPAKRTAVLS CEKKTTPHST EVANGCKPSG 0601: NGRSCCVPDL GVNNNCLELG SLPAAKAMRS SSLNSAAPAL NSSLFIWEMD SNSFGTGHAE RPVATIFKFH KAISKDLEFL DVESGKLIDC DGTFIRQFIG 0701: RFHLLWGFYK AHSNAEDDIL FPALESKETL HNVSHSYTLD HKQEEKLFGD IYSVLTELSI LHEKLQSDSM MEDIAQTDTV RTDIDNGDCN KKYNELATKL 0801: QGMCKSIKIT LDQHIFLEEL ELWPLFDKHF SIQEQDKIVG RIIGTTGAEV LQSMLPWVTS ALSEDEQNRM MDTWKQATKN TMFDEWLNEC WKGSPDSSST 0901: ETSKPSPQKD NDHQEILDQS GELFKPGWKD IFRMNQNELE AEIRKVYQDS TLDPRRKDYL VQNWRTSRWI AAQQKLPKEA ETAVNGDVEL GCSPSFRDPE 1001: KQIYGCEHYK RNCKLRAACC DQLFTCRFCH DKVSDHSMDR KLVTEMLCMR CLKVQPVGPI CTTPSCDGFP MAKHYCSICK LFDDERAVYH CPFCNLCRVG 1101: EGLGIDFFHC MTCNCCLGMK LVNHKCLEKS LETNCPICCE FLFTSSEAVR ALPCGHYMHS ACFQAYTCSH YTCPICGKSL GDMAVYFGML DALLAAEELP 1201: EEYKNRCQDI LCNDCERKGT TRFHWLYHKC GSCGSYNTRV IKSETIPPDC STSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)