suba logo
AT5G13740.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
vacuole 0.910
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc induced facilitator 1
Curator
Summary (TAIR10)
Encodes ZIF1 (ZINC-INDUCED FACILITATOR1), a member of the Major Facilitator Superfamily (MFS) of membrane proteins which are found in all organisms and transport a wide range of small, organic molecules. Involved in a mechanism of Zn sequestration, possibly by transport of a Zn ligand or Zn-ligand complex into vacuoles.
Computational
Description (TAIR10)
zinc induced facilitator 1 (ZIF1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, tetracycline:hydrogen antiporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to zinc ion, zinc ion homeostasis, response to nematode; LOCATED IN: plant-type vacuole membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Tetracycline resistance protein, TetA (InterPro:IPR001958), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: zinc induced facilitator-like 1 (TAIR:AT5G13750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSE0eggNOG:KOG2615EMBL:AB006704EMBL:AB011484
EMBL:AY092979EMBL:AY128800EMBL:CP002688EnsemblPlants:AT5G13740
EnsemblPlants:AT5G13740.1entrez:831219GeneID:831219Genevisible:Q8RWN2
GO:GO:0005886GO:GO:0009624GO:GO:0009705GO:GO:0010043
GO:GO:0016021GO:GO:0022821GO:GO:0055069GO:GO:0071805
GO:GO:0090333Gramene:AT5G13740.1HOGENOM:HOG000242165InParanoid:Q8RWN2
InterPro:IPR001958InterPro:IPR011701InterPro:IPR020846KEGG:ath:AT5G13740
OMA:GKNERKAPaxDb:Q8RWN2Pfam:PF07690Pfam:Q8RWN2
Pfscan:PS50850PhylomeDB:Q8RWN2PRIDE:Q8RWN2PRINTS:PR01035
PRO:PR:Q8RWN2PROSITE:PS50850ProteinModelPortal:Q8RWN2Proteomes:UP000006548
RefSeq:NP_196878.2STRING:3702.AT5G13740.1SUPFAM:SSF103473TAIR:AT5G13740
tair10-symbols:ZIF1TCDB:2.A.1.2.58TMHMM:TMhelixUniGene:At.44340
UniProt:Q8RWN2
Coordinates (TAIR10) chr5:+:4432689..4436483
Molecular Weight (calculated) 53182.20 Da
IEP (calculated) 8.37
GRAVY (calculated) 0.46
Length 486 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEYKEALL EKQNYHDGCP GCKVEQMKQL RRGYPYLELS FVWIIVLSTS LPISSLYPFL YYMIEDFGVA KTEKDIGFYA GFVGCSFMLG RALTSVFWGI
101: VADRYGRKPI ILLGTISIAI FNALFGLSSN FWMAIGTRFL LGSFNCLLGT MKAYASEIFR DEYQATAMSA VSTAWGIGLI IGPALGGFLA QPADKYPNVF
201: SQESLFGRFR YALPCFTISA FALLVTVLCC FIPETLHNHK LDSLSHDDSY DILEAASHES SPSTGKAGKN ERKASQSLLK NWPLMSSIIV YCVLCLHDTA
301: YSEIFALWAN SPRKYGGLSY STNEVGTVLA ISGLGLFSFQ VFVYPLAEKL LGPVLVTRYA GALMIPIQMS YPFIAGLSGL SLSLMLNCAS ILINVLSVSA
401: ITGLLILQNR AVDQSQRGAA NGIAMTAMSL FKTVGPAGAG ILFSWSERRL NAAFLPGSHM VFFVLNVIVV VGVALTFKPF LTTSRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)