AT1G06240.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function DUF455 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function DUF455; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF455 (InterPro:IPR007402); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF455 (TAIR:AT5G04520.1); Has 954 Blast hits to 954 proteins in 412 species: Archae - 0; Bacteria - 697; Metazoa - 13; Fungi - 46; Plants - 75; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:1911166..1912875 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 42272.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.92 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||
| Length | 383 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLIHHLRPFS TASLSPRSLT ISTALSSSST KQQHKLWSGL ENWRKSPVND LRLWGPTGPL LPSSSDSISA DFYGLVSAAS SLADLGALVL STSDPLSKSH 101: ISHLAFSRWR RENLPVGSIS HLPSSPARPP KPLLVATNQV PNPKDSNLPL NAHMLHNLAH VELNAIDLAW DTVARFSPFF DLLGHNFFDD FAHVADDESR 201: HFLWCSQRLA ELGFKYGDIP ANNLLMRECE KTSNNVAARL ACIPLVQEAR GLDAGPRLVK RLTGFGDNRT SKIVAKIAEE EVAHVAVGVD WFLSVCQKMN 301: RAPSPTFKDL IKEYGVELRG PFNHSAREVA GIPRDWYDPS CGTEVDKGDN EQGDKEQLSA VYDRLTHIIS MESENSSLEK PAK |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)