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AT5G04440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1997)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1997); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1997 (InterPro:IPR018971); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1997) (TAIR:AT4G31115.1); Has 266 Blast hits to 266 proteins in 73 species: Archae - 0; Bacteria - 111; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEQ5eggNOG:ENOG4111PIVEMBL:BT022095EMBL:BT024482
EMBL:CP002688EnsemblPlants:AT5G04440EnsemblPlants:AT5G04440.1entrez:830323
GeneID:830323GO:GO:0009507Gramene:AT5G04440.1hmmpanther:PTHR34131
hmmpanther:PTHR34131:SF1InterPro:IPR018971KEGG:ath:AT5G04440OMA:NGCCISL
Pfam:PF09366PhylomeDB:Q500X2Proteomes:UP000006548RefSeq:NP_196064.2
STRING:3702.AT5G04440.1TAIR:AT5G04440UniGene:At.33125UniProt:Q500X2
Coordinates (TAIR10) chr5:+:1254957..1256624
Molecular Weight (calculated) 28157.50 Da
IEP (calculated) 8.10
GRAVY (calculated) -0.17
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSSATLRL TSLSFSAKKT NRNPRNPALS FTITSSSSFD ESPKPSSLAT SSSTSPIRVS SSSTPKARFI ARQKQSVSVR QLQRPLIEYM SLPASQYSVL
101: DAERIERVDD NTFRCYVYTF KFFNFEVCPV LLVRVEEQPN GCCIKLLSCK LEGSPVVVAQ NDKFDASMVN RVSCDSTQEG SSEQQITSDA VIEVNIEIPF
201: AFRVFPVGAI EATGTQVLDQ ILKLMLPRFL SQLSKDYHAW ASGDTSRQPL GTGEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)