AT1G22850.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : SNARE associated Golgi protein family | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SNARE associated Golgi protein family; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT1G03260.1); Has 4604 Blast hits to 4604 proteins in 1169 species: Archae - 23; Bacteria - 2889; Metazoa - 197; Fungi - 87; Plants - 283; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:8080671..8082816 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36906.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.94 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.14 | ||||||||||||||||||||||||||||||||
| Length | 344 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSLTLGLTL RSSSSSSLPF TCNSRFCSPP PPSSSFRLYK RFHFLKPCSS LKQTKKKKQQ SLPSTAPPPQ SLRWFFNSKS TNDENDEDDV KSESDDDGGS 101: EGDAAIKGTI LAGVLLIGTV GGFAGVGYVY RDQINTFLTQ FSTYIEGYGT AGYALFIAVY AGLEILAIPA LPLTMSAGLL FGPLIGTIIV SISGTMAASV 201: AFLIARYFAR ERILKLVEDN KKFLAIDKAI GENGFRVVTL LRLSPLLPFS LGNYLYGLTS VKFVPYVLGS WLGMLPGSWA YVSAGAFGRA IIQEESNVGL 301: PGGNGQLLTL GVGLLVTALA GTYVTSLAKD AIKDIDDDEK RDAK |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)