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AT5G11770.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:23761796 (2013): mitochondrion
  • PMID:23750852 (2013): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:21296373 (2011): mitochondrion
  • PMID:20197505 (2010): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:18189341 (2008): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:12837548 (2003): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity, zinc ion binding; INVOLVED IN: oxidation reduction, mitochondrial electron transport, NADH to ubiquinone; LOCATED IN: mitochondrion, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase-like, 20kDa subunit (InterPro:IPR006137), [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB (InterPro:IPR014406), NADH:ubiquinone oxidoreductase, 20kDa subunit (InterPro:IPR006138); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein G (TAIR:ATCG00430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G11770-MONOMERBioCyc:MetaCyc:AT5G11770-MONOMERBioGrid:16327EC:1.6.5.3
EC:1.6.99.3eggNOG:COG0377eggNOG:KOG1687EMBL:AF428300
EMBL:AL163814EMBL:AY056182EMBL:AY085120EMBL:AY099848
EMBL:AY128912EMBL:CP002688EMBL:X84078EnsemblPlants:AT5G11770
EnsemblPlants:AT5G11770.1entrez:831049Gene3D:3.40.50.700GeneID:831049
Genevisible:Q42577GO:GO:0005739GO:GO:0005747GO:GO:0008137
GO:GO:0008270GO:GO:0048038GO:GO:0051539Gramene:AT5G11770.1
HAMAP:MF_01356hmmpanther:PTHR11995hmmpanther:PTHR11995:SF19HOGENOM:HOG000228249
InParanoid:Q42577IntAct:Q42577InterPro:IPR006137InterPro:IPR006138
KEGG:ath:AT5G11770KO:K03940OMA:LGNCAISPaxDb:Q42577
Pfam:PF01058Pfam:Q42577PhylomeDB:Q42577PIR:S52286
PRIDE:Q42577PRO:PR:Q42577PROSITE:PS01150ProteinModelPortal:Q42577
Proteomes:UP000006548Reactome:R-ATH-6799198RefSeq:NP_196738.1scanprosite:PS01150
SMR:Q42577STRING:3702.AT5G11770.1SUPFAM:SSF56770TAIR:AT5G11770
TCDB:3.D.1.6.3TIGRfam:TIGR01957TIGRFAMs:TIGR01957UniGene:At.23410
UniProt:Q42577
Coordinates (TAIR10) chr5:-:3791148..3792929
Molecular Weight (calculated) 24045.30 Da
IEP (calculated) 9.74
GRAVY (calculated) -0.12
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMITRNTAT RLPLLLQSQR AVAAASVSHL HTSLPALSPS TSPTSYTRPG PPSTSPPPPG LSKAAEFVIS KVDDLMNWAR TGSIWPMTFG LACCAVEMMH
101: TGAARYDLDR FGIIFRPSPR QSDCMIVAGT LTNKMAPALR KVYDQMPEPR WVISMGSCAN GGGYYHYSYS VVRGCDRIVP VDIYVPGCPP TAEALLYGLL
201: QLQKKINRRK DFLHWWNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)