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AT5G52840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:28524096 (2017): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24124904 (2013): plastid
  • PMID:23761796 (2013): mitochondrion
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23444301 (2013): mitochondrion
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:22968828 (2012): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22540835 (2012): mitochondrion
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21296373 (2011): mitochondrion
  • PMID:20197505 (2010): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:18189341 (2008): mitochondrion
  • PMID:17406791 (2007): mitochondrion
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:12837548 (2003): mitochondrion
  • PMID:11743115 (2001): mitochondrion
  • PMID:11743114 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NADH-ubiquinone oxidoreductase-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NADH-ubiquinone oxidoreductase-related; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, chloroplast, respiratory chain complex I, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ETC complex I subunit (InterPro:IPR006806); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28005.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G52840-MONOMERBioCyc:MetaCyc:AT5G52840-MONOMEReggNOG:ENOG4111V89eggNOG:KOG3365
EMBL:AB009055EMBL:AY054251EMBL:AY079117EMBL:CP002688
EnsemblPlants:AT5G52840EnsemblPlants:AT5G52840.1entrez:835361GeneID:835361
Genevisible:Q9FLX7GO:GO:0005739GO:GO:0005747GO:GO:0009507
GO:GO:0009853GO:GO:0016020GO:GO:0016651GO:GO:0022904
GO:GO:0031966GO:GO:0045271Gramene:AT5G52840.1hmmpanther:PTHR12653
HOGENOM:HOG000240009InParanoid:Q9FLX7IntAct:Q9FLX7InterPro:IPR006806
iPTMnet:Q9FLX7KEGG:ath:AT5G52840KO:K03949OMA:WENIEKR
PaxDb:Q9FLX7Pfam:PF04716Pfam:Q9FLX7PhylomeDB:Q9FLX7
PRIDE:Q9FLX7PRO:PR:Q9FLX7Proteomes:UP000006548RefSeq:NP_568778.1
STRING:3702.AT5G52840.1SwissPalm:Q9FLX7TAIR:AT5G52840TCDB:3.D.1.6.3
UniGene:At.29591UniGene:At.66774UniProt:Q9FLX7
Coordinates (TAIR10) chr5:+:21413718..21414794
Molecular Weight (calculated) 19180.00 Da
IEP (calculated) 4.41
GRAVY (calculated) -0.48
Length 169 amino acids
Sequence (TAIR10)
(BLAST)
001: MFLRAIGRPL LAKVKQTTGI VGLDVVPNAR AVLIDLYSKT LKEIQAVPED EGYRKAVESF TRQRLNVCKE EEDWEMIEKR LGCGQVEELI EEARDELTLI
101: GKMIEWDPWG VPDDYECEVI ENDAPIPKHV PQHRPGPLPE QFYKTLEGLI AESKTEIPAA TPSDPQLKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)