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AT1G79010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Alpha-helical ferredoxin
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Alpha-helical ferredoxin; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity, metal ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: 4Fe-4S binding domain (InterPro:IPR001450), NADH-quinone oxidoreductase, chain I (InterPro:IPR010226), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), Alpha-helical ferredoxin (InterPro:IPR009051); BEST Arabidopsis thaliana protein match is: Alpha-helical ferredoxin (TAIR:AT1G16700.1); Has 11535 Blast hits to 10912 proteins in 2421 species: Archae - 1438; Bacteria - 6995; Metazoa - 154; Fungi - 106; Plants - 790; Viruses - 1; Other Eukaryotes - 2051 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G79010-MONOMERBioCyc:MetaCyc:AT1G79010-MONOMERBioGrid:29461EC:1.6.5.3
EC:1.6.99.3eggNOG:COG1143eggNOG:KOG3256EMBL:AC002986
EMBL:AK226368EMBL:AY048241EMBL:AY072622EMBL:AY088308
EMBL:CP002684EMBL:X84318EnsemblPlants:AT1G79010EnsemblPlants:AT1G79010.1
entrez:844242GeneID:844242Genevisible:Q42599GO:GO:0005739
GO:GO:0005747GO:GO:0008137GO:GO:0046872GO:GO:0051539
Gramene:AT1G79010.1gramene_pathway:1.6.5.3gramene_pathway:PWY-3781gramene_pathway:PWY-4302
gramene_pathway:PWY-5083HAMAP:MF_01351hmmpanther:PTHR10849hmmpanther:PTHR10849:SF16
HOGENOM:HOG000228289InParanoid:Q42599IntAct:Q42599InterPro:IPR010226
InterPro:IPR017896InterPro:IPR017900KEGG:ath:AT1G79010KO:K03941
OMA:ANAINIKPaxDb:Q42599Pfam:PF12838Pfam:Q42599
Pfscan:PS51379PhylomeDB:Q42599PIR:S52380PRIDE:Q42599
PRO:PR:Q42599PROSITE:PS00198PROSITE:PS51379ProteinModelPortal:Q42599
Proteomes:UP000006548Reactome:R-ATH-6799198RefSeq:NP_178022.1scanprosite:PS00198
SMR:Q42599STRING:3702.AT1G79010.1SUPFAM:SSF54862SwissPalm:Q42599
TAIR:AT1G79010TIGRfam:TIGR01971TIGRFAMs:TIGR01971UniGene:At.24660
UniProt:Q42599
Coordinates (TAIR10) chr1:-:29725138..29726933
Molecular Weight (calculated) 25504.10 Da
IEP (calculated) 5.09
GRAVY (calculated) -0.56
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MASILARRSL NTLRARHLVL SGQALQGSHL SRLQSRGISY GSNKDDEEAE QLSKEISKDW NTVFERSINT LFLTEMVRGL SLTLKYFFDP KVTINYPFEK
101: GPLSPRFRGE HALRRYPTGE ERCIACKLCE AVCPAQAITI EAEEREDGSR RTTRYDIDMT KCIYCGFCQE ACPVDAIVEG PNFEFATETH EELLYDKEKL
201: LENGDRWETE IAENLRSESL YR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)