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AT1G26550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: isomerase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (TAIR:AT2G18040.1); Has 6979 Blast hits to 6709 proteins in 1619 species: Archae - 14; Bacteria - 5328; Metazoa - 276; Fungi - 185; Plants - 213; Viruses - 0; Other Eukaryotes - 963 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G26550-MONOMEReggNOG:COG0760eggNOG:KOG3258EMBL:AC013427
EMBL:AF332414EMBL:AY085286EMBL:CP002684EnsemblPlants:AT1G26550
EnsemblPlants:AT1G26550.1entrez:839195GeneID:839195GO:GO:0016853
Gramene:AT1G26550.1hmmpanther:PTHR10657HOGENOM:HOG000275330InterPro:IPR000297
KEGG:ath:AT1G26550KO:K09579OMA:ASEYSECPfam:PF13616
Pfscan:PS50198PhylomeDB:Q9FE18PIR:E86392PROSITE:PS50198
Proteomes:UP000006548RefSeq:NP_564250.1SMR:Q9FE18STRING:3702.AT1G26550.1
SUPFAM:SSF54534TAIR:AT1G26550UniGene:At.15957UniProt:Q9FE18
Coordinates (TAIR10) chr1:+:9171800..9172716
Molecular Weight (calculated) 14857.70 Da
IEP (calculated) 10.16
GRAVY (calculated) -0.72
Length 142 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKDAKAGGK GKGKQASGSE EAPSKGKGKA GKAADGLGTC TYVKARHVLC EKQGKINEAY KKLQDGWLSN GDKVPPAEFA KIAAEYSECP SGKKGGDLGW
101: FPRGKMAGPF QDVAFNTPVG VTSAPFKSTH GYHIILSEGR KN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)