AT4G38220.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.999 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Peptidase M20/M25/M40 family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Peptidase M20/M25/M40 family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, aminoacylase activity; INVOLVED IN: response to zinc ion; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ArgE/DapE/ACY1/CPG2/YscS, conserved site (InterPro:IPR001261), Peptidase M20 (InterPro:IPR002933), N-acyl-L-amino-acid amidohydrolase (InterPro:IPR010159), Peptidase M20, dimerisation (InterPro:IPR011650); BEST Arabidopsis thaliana protein match is: Peptidase M20/M25/M40 family protein (TAIR:AT1G44820.1); Has 7635 Blast hits to 7629 proteins in 1864 species: Archae - 183; Bacteria - 5555; Metazoa - 388; Fungi - 290; Plants - 78; Viruses - 2; Other Eukaryotes - 1139 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:17925251..17926919 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 47742.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 430 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSLLRLLLVV VVLHLSAVAG DDAIVSRFQE YLRINTVQPN PEYYKAVDFI ISQAKPLSLE SQTIEFVKGK PLLLLKWVGS DPTLPAFLLN SHTDVVPFED 101: SKWTHHPLQA HMDHHGDIYA RGSQDMKCVG MQYLEAIRKL QASGFKPLRS VYLSFVPDEE IGGHDGAEKF AESQLFKSLN IAIVLDEGLP SPTESYRVFY 201: GERSPWWLVI KAKGPPGHGA KLYDNSAMEN LLKSIESIRR FRASQFDLLK AGGIAEGDVV SVNMAFLKAG TPSPTGFVMN LQPSEAEAGF DIRVPPSVDA 301: EALERRLVEE WAPAARNMSF EFKQKLTGKQ FLTAADDSNP WWGLLENAVK EAGGRTSKPE IFPASTDARY FRKAGVPAFG FSPISNTPSL LHDHNEYLGK 401: AEYLKGIEVY VSIIKAYASY ESKSGSRDEL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)