suba logo
AT4G38220.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptidase M20/M25/M40 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptidase M20/M25/M40 family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, aminoacylase activity; INVOLVED IN: response to zinc ion; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ArgE/DapE/ACY1/CPG2/YscS, conserved site (InterPro:IPR001261), Peptidase M20 (InterPro:IPR002933), N-acyl-L-amino-acid amidohydrolase (InterPro:IPR010159), Peptidase M20, dimerisation (InterPro:IPR011650); BEST Arabidopsis thaliana protein match is: Peptidase M20/M25/M40 family protein (TAIR:AT1G44820.1); Has 7635 Blast hits to 7629 proteins in 1864 species: Archae - 183; Bacteria - 5555; Metazoa - 388; Fungi - 290; Plants - 78; Viruses - 2; Other Eukaryotes - 1139 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-507-MONOMEREC:3.5.1.14eggNOG:COG0624eggNOG:KOG2275
EMBL:AY074847EMBL:CP002687EnsemblPlants:AT4G38220EnsemblPlants:AT4G38220.1
entrez:829978ExpressionAtlas:Q8S9L3Gene3D:3.30.70.360GeneID:829978
GO:GO:0004046GO:GO:0005737GO:GO:0006520GO:GO:0008237
GO:GO:0046872Gramene:AT4G38220.1hmmpanther:PTHR11014hmmpanther:PTHR11014:SF56
HOGENOM:HOG000021196InterPro:IPR001261InterPro:IPR002933InterPro:IPR010159
InterPro:IPR011650KEGG:ath:AT4G38220KO:K14677merops:M20.973
Pfam:PF01546Pfam:PF07687PhylomeDB:Q8S9L3PIRSF:PIRSF036696
ProMEX:Q8S9L3PROSITE:PS00759Proteomes:UP000006548Reactome:R-ATH-5423646
RefSeq:NP_568036.2scanprosite:PS00759SMR:Q8S9L3STRING:3702.AT4G38220.2
SUPFAM:SSF53187SUPFAM:SSF55031TAIR:AT4G38220TIGRfam:TIGR01880
TIGRFAMs:TIGR01880UniGene:At.20084UniProt:Q8S9L3
Coordinates (TAIR10) chr4:+:17925251..17926919
Molecular Weight (calculated) 47742.00 Da
IEP (calculated) 6.30
GRAVY (calculated) -0.21
Length 430 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLLRLLLVV VVLHLSAVAG DDAIVSRFQE YLRINTVQPN PEYYKAVDFI ISQAKPLSLE SQTIEFVKGK PLLLLKWVGS DPTLPAFLLN SHTDVVPFED
101: SKWTHHPLQA HMDHHGDIYA RGSQDMKCVG MQYLEAIRKL QASGFKPLRS VYLSFVPDEE IGGHDGAEKF AESQLFKSLN IAIVLDEGLP SPTESYRVFY
201: GERSPWWLVI KAKGPPGHGA KLYDNSAMEN LLKSIESIRR FRASQFDLLK AGGIAEGDVV SVNMAFLKAG TPSPTGFVMN LQPSEAEAGF DIRVPPSVDA
301: EALERRLVEE WAPAARNMSF EFKQKLTGKQ FLTAADDSNP WWGLLENAVK EAGGRTSKPE IFPASTDARY FRKAGVPAFG FSPISNTPSL LHDHNEYLGK
401: AEYLKGIEVY VSIIKAYASY ESKSGSRDEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)