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AT5G66140.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : proteasome alpha subunit D2
Curator
Summary (TAIR10)
Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.
Computational
Description (TAIR10)
proteasome alpha subunit D2 (PAD2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, proteasome core complex, alpha-subunit complex, chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit PAD1 (TAIR:AT3G51260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G66140-MONOMERBioGrid:21988EC:3.4.25.1eggNOG:ENOG410XP21
eggNOG:KOG0183EMBL:AB011474EMBL:AF043523EMBL:AK227551
EMBL:BT004572EMBL:CP002688EMBL:Y13179EMBL:Y13180
EnsemblPlants:AT5G66140EnsemblPlants:AT5G66140.1entrez:836746Gene3D:3.60.20.10
GeneID:836746Genevisible:O24616GO:GO:0000502GO:GO:0004298
GO:GO:0005634GO:GO:0005773GO:GO:0006511GO:GO:0009507
GO:GO:0019773Gramene:AT5G66140.1hmmpanther:PTHR11599hmmpanther:PTHR11599:SF15
HOGENOM:HOG000091085InParanoid:O24616InterPro:IPR000426InterPro:IPR001353
InterPro:IPR023332InterPro:IPR029055KEGG:ath:AT5G66140KO:K02731
merops:T01.974ncoils:CoilOMA:ERNYKEDPaxDb:O24616
Pfam:O24616Pfam:PF00227Pfam:PF10584Pfscan:PS51475
PhylomeDB:O24616PIR:T51971PRIDE:O24616PRO:PR:O24616
PROSITE:PS00388PROSITE:PS51475ProteinModelPortal:O24616Proteomes:UP000006548
Reactome:R-ATH-1236978Reactome:R-ATH-174184Reactome:R-ATH-349425Reactome:R-ATH-5632684
Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-983168RefSeq:NP_201415.1
scanprosite:PS00388SMART:SM00948SMR:O24616STRING:3702.AT5G66140.1
SUPFAM:SSF56235TAIR:AT5G66140tair10-symbols:PAD2UniGene:At.24248
UniProt:O24616
Coordinates (TAIR10) chr5:-:26437445..26438677
Molecular Weight (calculated) 27325.60 Da
IEP (calculated) 8.97
GRAVY (calculated) -0.31
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDSRSA RKIVSLDNHI ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY SRLPSLYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SSGQETIKLA IRALLEVVES
201: GGKNIEVAVM TREETGLRQL EEAEIDAIVA KIEAEKAAAE AAKKGPPKET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)