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AT5G13050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 5-formyltetrahydrofolate cycloligase
Curator
Summary (TAIR10)
5-Formyltetrahydrofolate cycloligase (5-CHO-THF cycloligase - AT5G13050.1) regulates/influences under photorespiratory conditions the activity of another gene product, i.e. serine hydroxymethyltransferase (SHMT) due to accumulating amounts of 5-Formyltetrahydrofolate
Computational
Description (TAIR10)
5-formyltetrahydrofolate cycloligase (5-FCL); CONTAINS InterPro DOMAIN/s: 5-formyltetrahydrofolate cyclo-ligase (InterPro:IPR002698); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G13050-MONOMERBRENDA:6.3.3.2EC:6.3.3.2eggNOG:COG0212
eggNOG:KOG3093EMBL:AF516365EMBL:AL391711EMBL:AY084396
EMBL:BT003924EMBL:BT024502EMBL:BX830290EMBL:CP002688
EnsemblPlants:AT5G13050EnsemblPlants:AT5G13050.1EnsemblPlants:AT5G13050.2entrez:831144
ExpressionAtlas:Q8L539Gene3D:3.40.50.10420GeneID:831144Genevisible:Q8L539
GO:GO:0005524GO:GO:0005739GO:GO:0009396GO:GO:0030272
GO:GO:0035999GO:GO:0046653gramene_pathway:6.3.3.2gramene_pathway:PWY-2201
gramene_pathway:PWY-3841hmmpanther:PTHR23407hmmpanther:PTHR23407:SF1HOGENOM:HOG000007299
InParanoid:Q8L539InterPro:IPR002698InterPro:IPR024185KEGG:ath:AT5G13050
KO:K01934OMA:PWVEDKNPANTHER:PTHR23407:SF1PaxDb:Q8L539
Pfam:PF01812Pfam:Q8L539PhylomeDB:Q8L539PRIDE:Q8L539
PRO:PR:Q8L539ProteinModelPortal:Q8L539Proteomes:UP000006548RefSeq:NP_001031873.1
RefSeq:NP_568284.1SABIO-RK:Q8L539SMR:Q8L539STRING:3702.AT5G13050.1
SUPFAM:SSF100950TAIR:AT5G13050tair10-symbols:5-FCLTIGRfam:TIGR02727
TIGRFAMs:TIGR02727UniGene:At.20443UniGene:At.71082UniProt:Q8L539
Coordinates (TAIR10) chr5:-:4136912..4138711
Molecular Weight (calculated) 31234.80 Da
IEP (calculated) 8.93
GRAVY (calculated) -0.30
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: MIGARVFCIT TTALRRSPIF FFPKIPTRPV FRLSPATRPI VAMSTTSKNQ EELDSIFKQK RVVRSTVRKS LKAMDPSLRT QQDEAIQKTV LEAPWFKSCK
101: GLCAYISCKS LNEVDTSKIL SEILQHPDSN TQKKLYVPWV EDKNSNMRML HISHMEDLVA NSMNILEPAP VDAQGNDRED VLQADEPIDL FILPGLAFDR
201: CGRRLGRGGG YYDTFLKRYQ DRAKEKGWRY PLMVALSYSP QILEDGSIPV TPNDVLIDAL VTPSGVVPIT PRATESM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)