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AT1G15810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S15/NS1, RNA-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S15/NS1, RNA-binding protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15 (InterPro:IPR000589), Ribosomal protein S15, bacterial-type (InterPro:IPR005290), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: S15/NS1, RNA-binding protein (TAIR:AT1G80620.1); Has 8219 Blast hits to 8219 proteins in 2793 species: Archae - 0; Bacteria - 5437; Metazoa - 107; Fungi - 123; Plants - 505; Viruses - 0; Other Eukaryotes - 2047 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0184eggNOG:KOG2815EMBL:AC034256EMBL:AF361614
EMBL:AY133600EMBL:CP002684EnsemblPlants:AT1G15810EnsemblPlants:AT1G15810.1
entrez:838150Gene3D:1.10.287.10GeneID:838150GO:GO:0003735
GO:GO:0005840GO:GO:0006412Gramene:AT1G15810.1HAMAP:MF_01343_B
hmmpanther:PTHR23321hmmpanther:PTHR23321:SF26HOGENOM:HOG000070921IntAct:Q9LMQ3
InterPro:IPR000589InterPro:IPR005290InterPro:IPR009068KEGG:ath:AT1G15810
OMA:YNEEELGPfam:PF00312PhylomeDB:Q9LMQ3PIR:E86292
Proteomes:UP000006548RefSeq:NP_563982.1SMART:SM01387SMR:Q9LMQ3
STRING:3702.AT1G15810.1SUPFAM:SSF47060TAIR:AT1G15810TIGRfam:TIGR00952
TIGRFAMs:TIGR00952UniGene:At.15569UniGene:At.72611UniGene:At.74824
UniGene:At.74983UniProt:Q9LMQ3
Coordinates (TAIR10) chr1:+:5444496..5446271
Molecular Weight (calculated) 47331.90 Da
IEP (calculated) 10.13
GRAVY (calculated) -0.90
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MALHLARRHQ RLPSNTSLIR FFSNSSSDSP PQFTNAPVEK PSQSPSSPSP SDSSPIFDIK NTLKLKLQNQ QEQGRKPFDR SDAQSQNRGS TSFSQNLGKN
101: LAKFQRRSTV PPPRDSGGVQ PPSYISLAGL YKQSAATNSS DPRNSKAQGF NSNTVSETLK NLRTQINTSN NMGKRGGVLG SFKSTVGEAL PKYLFETQMD
201: ESKGSEGETE EAMTEFLMFY NEEELGEKLR TLRPEGEKKE GWFSLEELNQ RLVKLRQVEE KEAQYRTKNF AQLRNVISSF KNENSEASSQ QNVAIMGHLG
301: GIPEYKLLPP KEDLVDTYFH PDNMSSAEKM KIELSKVREE FKMSESDCGS ARVQVAQLTT KIKHLSSSLH KKDKHSRKGL LGMVQKRKKL LKYLRRTDWD
401: SYCLVLSKLS LRDNPDYKC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)