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AT2G42710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L1p/L10e family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, bacterial-type (InterPro:IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT3G63490.1); Has 9261 Blast hits to 9236 proteins in 2822 species: Archae - 147; Bacteria - 5388; Metazoa - 398; Fungi - 257; Plants - 180; Viruses - 2; Other Eukaryotes - 2889 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0081eggNOG:KOG1569EMBL:AK118309EMBL:AY091124
EMBL:AY113995EMBL:CP002685EnsemblPlants:AT2G42710EnsemblPlants:AT2G42710.1
entrez:818871Gene3D:3.30.190.20Gene3D:3.40.50.790GeneID:818871
GO:GO:0003723GO:GO:0003735GO:GO:0006412GO:GO:0015934
Gramene:AT2G42710.1hmmpanther:PTHR23105hmmpanther:PTHR23105:SF51HOGENOM:HOG000207015
InterPro:IPR005878InterPro:IPR016094InterPro:IPR016095InterPro:IPR023674
InterPro:IPR028364KEGG:ath:AT2G42710OMA:ENVGAFMPfam:PF00687
PhylomeDB:Q8RWT4Proteomes:UP000006548RefSeq:NP_850375.1SMR:Q8RWT4
STRING:3702.AT2G42710.1SUPFAM:SSF56808TAIR:AT2G42710TIGRfam:TIGR01169
TIGRFAMs:TIGR01169UniGene:At.36979UniProt:Q8RWT4
Coordinates (TAIR10) chr2:+:17782352..17784830
Molecular Weight (calculated) 45782.90 Da
IEP (calculated) 10.19
GRAVY (calculated) -0.57
Length 415 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAMKLLLSQ ARRQGLIKPF SSPFQQIPRL FSSSSSSSSS SSSSSDSNPS PDSNESRKKA VTIEPVSYAA KPKDQKSEPK NVESTENLQS PESANWTREE
101: IRYVKDSPSI NPVSYAQRVA PLPEDRVAGE NEGDRTPEEM ERERKRIELE NRARRRFLRA NAVEEDTSSL PLPTLLKPEL KHGKKPIFDL MEAIREIKGN
201: AKAKFDETLE AHVRLGIEKG RSELIVRGTL ALPHSVKKDV KVAFFAEGAD AEDAKAAGAD VVGGLELIEE ILKSGKIDFD RCLATPKMMP RVYKISRILN
301: NHGLMPNPKQ GSVTKDVTKA VKDAKAGHTK FRMDKTSILH VPLGKMSFSE EALRENVGAF MNALLLAKPA GLKKTSKYAG YVNAFHLCST MGKGYPVSIQ
401: SLSRAADLHT KLQLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)