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AT4G26780.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At4g26780-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At4g26780-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Co-chaperone GrpE family protein
Curator
Summary (TAIR10)
unknown function
Computational
Description (TAIR10)
AR192; FUNCTIONS IN: copper ion binding; INVOLVED IN: protein folding, protein import into mitochondrial matrix; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GrpE nucleotide exchange factor (InterPro:IPR000740), GrpE nucleotide exchange factor, head (InterPro:IPR009012), GrpE nucleotide exchange factor, coiled-coil (InterPro:IPR013805); BEST Arabidopsis thaliana protein match is: Co-chaperone GrpE family protein (TAIR:AT5G55200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0576eggNOG:KOG3003EMBL:AK118205EMBL:AY087425
EMBL:BT006047EMBL:CP002687EnsemblPlants:AT4G26780EnsemblPlants:AT4G26780.1
entrez:828785Gene3D:2.30.22.10Gene3D:3.90.20.20GeneID:828785
GO:GO:0000774GO:GO:0005507GO:GO:0005739GO:GO:0005759
GO:GO:0006457GO:GO:0009408GO:GO:0010286Gramene:AT4G26780.1
HAMAP:MF_01151hmmpanther:PTHR21237hmmpanther:PTHR21237:SF23HOGENOM:HOG000252083
IntAct:Q8LB47InterPro:IPR000740InterPro:IPR009012InterPro:IPR013805
KEGG:ath:AT4G26780KO:K03687ncoils:CoilOMA:SHKLVPA
PANTHER:PTHR21237Pfam:PF01025PhylomeDB:Q8LB47PRINTS:PR00773
PROSITE:PS01071Proteomes:UP000006548RefSeq:NP_567757.1scanprosite:PS01071
SMR:Q8LB47STRING:3702.AT4G26780.1SUPFAM:0036470SUPFAM:0053405
SUPFAM:SSF51064TAIR:AT4G26780tair10-symbols:AR192UniGene:At.2590
UniProt:Q8LB47
Coordinates (TAIR10) chr4:-:13485066..13486560
Molecular Weight (calculated) 36118.00 Da
IEP (calculated) 5.04
GRAVY (calculated) -0.75
Length 327 amino acids
Sequence (TAIR10)
(BLAST)
001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)